Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ei24Etoposide-induced protein 2.4-like protein. (343 aa)    
Predicted Functional Partners:
tp53i3
PKS_ER domain-containing protein.
     
 0.900
ttc37
Uncharacterized protein.
      
 0.692
epg5
Uncharacterized protein.
      
 0.672
vmp1
Uncharacterized protein.
      
 0.668
LOC103173381
Uncharacterized protein.
      
 0.653
trappc10
Uncharacterized protein.
      
 0.585
tbrg1
Uncharacterized protein.
      
 0.529
Atg101
Uncharacterized protein.
      
 0.497
ddx11
Putative ATP-dependent RNA helicase DDX11-like protein 8.
      
 0.483
gramd1b
VASt domain-containing protein.
      
 0.473
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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