STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nsd1Uncharacterized protein. (1325 aa)    
Predicted Functional Partners:
nup98
Peptidase S59 domain-containing protein.
   
 
 0.708
eed
WD_REPEATS_REGION domain-containing protein.
   
 0.685
mre11
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
   
 0.634
uba52
Ribosomal protein L40-like isoform 1.
    
  0.604
suz12
VEFS-Box domain-containing protein.
    
 0.596
rbbp5
WD_REPEATS_REGION domain-containing protein.
    
 0.591
ash2l
B30.2/SPRY domain-containing protein.
    
 0.590
rad50
Zinc-hook domain-containing protein.
   
 0.575
ENSCMIP00000004257
Histone H2B; Belongs to the histone H2B family.
    
 0.574
kdm6a
Uncharacterized protein.
   
 0.574
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.