aifm1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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[Homology]

Score

aifm1

Uncharacterized protein. (660 aa)

Predicted Functional Partners:

chchd4

0.965

ENSCMIP00000001094

0.941

ndufs5

0.928

ak2

0.920

LOC103175017

0.914

LOC103190153

0.914

LOC103190154

0.914

LOC103181459

0.909

LOC103183694

0.909

ENSCMIP00000000279

0.903

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000000279	aifm1	ENSCMIP00000000279	ENSCMIP00000011392	Histone H2A; Belongs to the histone H2A family.	Uncharacterized protein.	0.903
ENSCMIP00000001094	aifm1	ENSCMIP00000001094	ENSCMIP00000011392	Endonuclease.	Uncharacterized protein.	0.941
LOC103175017	LOC103190153	ENSCMIP00000041167	ENSCMIP00000045190	Uncharacterized protein.	Uncharacterized protein.	0.976
LOC103175017	LOC103190154	ENSCMIP00000041167	ENSCMIP00000045194	Uncharacterized protein.	Uncharacterized protein.	0.975
LOC103175017	aifm1	ENSCMIP00000041167	ENSCMIP00000011392	Uncharacterized protein.	Uncharacterized protein.	0.914
LOC103181459	aifm1	ENSCMIP00000007471	ENSCMIP00000011392	H2A histone family, member Y2; Belongs to the histone H2A family.	Uncharacterized protein.	0.909
LOC103183694	aifm1	ENSCMIP00000012775	ENSCMIP00000011392	Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.	Uncharacterized protein.	0.909
LOC103190153	LOC103175017	ENSCMIP00000045190	ENSCMIP00000041167	Uncharacterized protein.	Uncharacterized protein.	0.976
LOC103190153	LOC103190154	ENSCMIP00000045190	ENSCMIP00000045194	Uncharacterized protein.	Uncharacterized protein.	0.904
LOC103190153	aifm1	ENSCMIP00000045190	ENSCMIP00000011392	Uncharacterized protein.	Uncharacterized protein.	0.914
LOC103190154	LOC103175017	ENSCMIP00000045194	ENSCMIP00000041167	Uncharacterized protein.	Uncharacterized protein.	0.975
LOC103190154	LOC103190153	ENSCMIP00000045194	ENSCMIP00000045190	Uncharacterized protein.	Uncharacterized protein.	0.904
LOC103190154	aifm1	ENSCMIP00000045194	ENSCMIP00000011392	Uncharacterized protein.	Uncharacterized protein.	0.914
aifm1	ENSCMIP00000000279	ENSCMIP00000011392	ENSCMIP00000000279	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.903
aifm1	ENSCMIP00000001094	ENSCMIP00000011392	ENSCMIP00000001094	Uncharacterized protein.	Endonuclease.	0.941
aifm1	LOC103175017	ENSCMIP00000011392	ENSCMIP00000041167	Uncharacterized protein.	Uncharacterized protein.	0.914
aifm1	LOC103181459	ENSCMIP00000011392	ENSCMIP00000007471	Uncharacterized protein.	H2A histone family, member Y2; Belongs to the histone H2A family.	0.909
aifm1	LOC103183694	ENSCMIP00000011392	ENSCMIP00000012775	Uncharacterized protein.	Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.	0.909
aifm1	LOC103190153	ENSCMIP00000011392	ENSCMIP00000045190	Uncharacterized protein.	Uncharacterized protein.	0.914
aifm1	LOC103190154	ENSCMIP00000011392	ENSCMIP00000045194	Uncharacterized protein.	Uncharacterized protein.	0.914