dhx57 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

dhx57

Uncharacterized protein. (1197 aa)

Predicted Functional Partners:

rpsa

0.835

mlst8

0.794

larp7

0.785

itsn2

0.781

itsn1

0.722

LOC103172558

0.680

ap2s1

0.658

ashwin

0.639

ap2m1

0.638

mtrex

0.620

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103172558	dhx57	ENSCMIP00000009975	ENSCMIP00000011402	Uncharacterized protein.	Uncharacterized protein.	0.680
ap2m1	ap2s1	ENSCMIP00000032595	ENSCMIP00000027186	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.999
ap2m1	dhx57	ENSCMIP00000032595	ENSCMIP00000011402	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	Uncharacterized protein.	0.638
ap2m1	itsn1	ENSCMIP00000032595	ENSCMIP00000038775	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	Uncharacterized protein.	0.988
ap2m1	itsn2	ENSCMIP00000032595	ENSCMIP00000024182	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	Uncharacterized protein.	0.997
ap2s1	ap2m1	ENSCMIP00000027186	ENSCMIP00000032595	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.999
ap2s1	dhx57	ENSCMIP00000027186	ENSCMIP00000011402	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Uncharacterized protein.	0.658
ap2s1	itsn1	ENSCMIP00000027186	ENSCMIP00000038775	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Uncharacterized protein.	0.981
ap2s1	itsn2	ENSCMIP00000027186	ENSCMIP00000024182	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Uncharacterized protein.	0.995
ashwin	dhx57	ENSCMIP00000041182	ENSCMIP00000011402	Uncharacterized protein.	Uncharacterized protein.	0.639
dhx57	LOC103172558	ENSCMIP00000011402	ENSCMIP00000009975	Uncharacterized protein.	Uncharacterized protein.	0.680
dhx57	ap2m1	ENSCMIP00000011402	ENSCMIP00000032595	Uncharacterized protein.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.638
dhx57	ap2s1	ENSCMIP00000011402	ENSCMIP00000027186	Uncharacterized protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.658
dhx57	ashwin	ENSCMIP00000011402	ENSCMIP00000041182	Uncharacterized protein.	Uncharacterized protein.	0.639
dhx57	itsn1	ENSCMIP00000011402	ENSCMIP00000038775	Uncharacterized protein.	Uncharacterized protein.	0.722
dhx57	itsn2	ENSCMIP00000011402	ENSCMIP00000024182	Uncharacterized protein.	Uncharacterized protein.	0.781
dhx57	larp7	ENSCMIP00000011402	ENSCMIP00000015480	Uncharacterized protein.	Uncharacterized protein.	0.785
dhx57	mlst8	ENSCMIP00000011402	ENSCMIP00000011012	Uncharacterized protein.	Target of rapamycin complex subunit lst8.	0.794
dhx57	mtrex	ENSCMIP00000011402	ENSCMIP00000048124	Uncharacterized protein.	Uncharacterized protein.	0.620
dhx57	rpsa	ENSCMIP00000011402	ENSCMIP00000000448	Uncharacterized protein.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits; Belongs to the universal ribosomal protein uS2 family.	0.835