tex30 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

tex30

Uncharacterized protein. (224 aa)

Predicted Functional Partners:

mcrs1

0.887

kansl2

0.878

phf13

0.694

LOC103191471

0.694

phf20

0.694

kmt2e

0.694

zpbp2

0.664

cenpn

0.598

hcfc2

0.592

ENSCMIP00000020491

0.592

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000020491	LOC103191471	ENSCMIP00000020491	ENSCMIP00000009721	Uncharacterized protein.	PHD domain-containing protein.	0.618
ENSCMIP00000020491	hcfc2	ENSCMIP00000020491	ENSCMIP00000020449	Uncharacterized protein.	Uncharacterized protein.	0.891
ENSCMIP00000020491	kansl2	ENSCMIP00000020491	ENSCMIP00000024501	Uncharacterized protein.	Uncharacterized protein.	0.831
ENSCMIP00000020491	kmt2e	ENSCMIP00000020491	ENSCMIP00000032325	Uncharacterized protein.	Uncharacterized protein.	0.625
ENSCMIP00000020491	mcrs1	ENSCMIP00000020491	ENSCMIP00000035114	Uncharacterized protein.	FHA domain-containing protein.	0.839
ENSCMIP00000020491	phf13	ENSCMIP00000020491	ENSCMIP00000009525	Uncharacterized protein.	PHD domain-containing protein.	0.618
ENSCMIP00000020491	phf20	ENSCMIP00000020491	ENSCMIP00000025931	Uncharacterized protein.	C2H2-type domain-containing protein.	0.839
ENSCMIP00000020491	tex30	ENSCMIP00000020491	ENSCMIP00000011414	Uncharacterized protein.	Uncharacterized protein.	0.592
LOC103191471	ENSCMIP00000020491	ENSCMIP00000009721	ENSCMIP00000020491	PHD domain-containing protein.	Uncharacterized protein.	0.618
LOC103191471	hcfc2	ENSCMIP00000009721	ENSCMIP00000020449	PHD domain-containing protein.	Uncharacterized protein.	0.618
LOC103191471	kansl2	ENSCMIP00000009721	ENSCMIP00000024501	PHD domain-containing protein.	Uncharacterized protein.	0.807
LOC103191471	mcrs1	ENSCMIP00000009721	ENSCMIP00000035114	PHD domain-containing protein.	FHA domain-containing protein.	0.837
LOC103191471	tex30	ENSCMIP00000009721	ENSCMIP00000011414	PHD domain-containing protein.	Uncharacterized protein.	0.694
cenpn	tex30	ENSCMIP00000029796	ENSCMIP00000011414	Uncharacterized protein.	Uncharacterized protein.	0.598
hcfc2	ENSCMIP00000020491	ENSCMIP00000020449	ENSCMIP00000020491	Uncharacterized protein.	Uncharacterized protein.	0.891
hcfc2	LOC103191471	ENSCMIP00000020449	ENSCMIP00000009721	Uncharacterized protein.	PHD domain-containing protein.	0.618
hcfc2	kansl2	ENSCMIP00000020449	ENSCMIP00000024501	Uncharacterized protein.	Uncharacterized protein.	0.831
hcfc2	kmt2e	ENSCMIP00000020449	ENSCMIP00000032325	Uncharacterized protein.	Uncharacterized protein.	0.625
hcfc2	mcrs1	ENSCMIP00000020449	ENSCMIP00000035114	Uncharacterized protein.	FHA domain-containing protein.	0.839
hcfc2	phf13	ENSCMIP00000020449	ENSCMIP00000009525	Uncharacterized protein.	PHD domain-containing protein.	0.618