Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103182032Uncharacterized protein. (304 aa)    
Predicted Functional Partners:
lhx5
LIM/homeobox protein Lhx5.
    
 
 0.668
ldb2
LID domain-containing protein.
   
 
 0.667
LOC103187796
LID domain-containing protein.
   
 
 0.667
ldb1
LID domain-containing protein.
   
 
 0.667
lmo4
LIM zinc-binding domain-containing protein.
    
 
 0.629
lhx4
Uncharacterized protein.
    
 
 0.614
ENSCMIP00000000950
LIM zinc-binding domain-containing protein.
    
 
 0.565
Lhx3
Homeobox domain-containing protein.
    
 
 0.542
lmo3
Uncharacterized protein.
    
 
 0.541
lmo1
Uncharacterized protein.
    
 
 0.541
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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