STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trerf1Uncharacterized protein. (1145 aa)    
Predicted Functional Partners:
dnttip1
DNTTIP1_dimer domain-containing protein.
    
 
 0.990
elmsan1
Uncharacterized protein.
    
 
 0.925
taf8
Transcription initiation factor TFIID subunit 8.
      
 0.759
ENSCMIP00000000440
Uncharacterized protein.
      
 0.639
map3k8
Protein kinase domain-containing protein.
      
 0.609
LOC103184994
Uncharacterized protein; Belongs to the cytochrome P450 family.
      
 0.599
LOC103180710
Uncharacterized protein.
      
 0.599
map3k1
Uncharacterized protein.
      
 0.587
snrnp200
Uncharacterized protein.
      
 0.585
chst2
Sulfotransferase; Belongs to the sulfotransferase 1 family.
      
 0.554
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.