STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
utp25Digestive organ expansion factor-like protein. (763 aa)    
Predicted Functional Partners:
utp3
Something about silencing protein 10-like protein.
   
 0.998
utp14a
Uncharacterized protein.
   
 0.994
nop14
Uncharacterized protein.
   
 0.993
nol6
Nucleolar protein 6.
   
 0.988
noc4l
Nucleolar complex protein 4-like B.
   
 0.985
wdr46
WD_REPEATS_REGION domain-containing protein.
   
  0.983
ddx49
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.983
mphosph10
U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.
   
 0.983
fcf1
PINc domain-containing protein.
   
 0.983
rrp36
Uncharacterized protein.
   
 0.979
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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