isyna1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

isyna1

Inos-1-P_synth domain-containing protein. (553 aa)

Predicted Functional Partners:

impa1

0.994

inpp4a

0.900

cdipt

0.775

crls1

0.708

LOC103190839

0.694

inpp1

0.694

Impad1

0.694

bpnt1

0.694

aldh18a1

0.678

cth

0.635

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Impad1	LOC103190839	ENSCMIP00000043703	ENSCMIP00000030575	Uncharacterized protein.	Uncharacterized protein.	0.901
Impad1	aldh18a1	ENSCMIP00000043703	ENSCMIP00000029682	Uncharacterized protein.	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	0.552
Impad1	bpnt1	ENSCMIP00000043703	ENSCMIP00000043721	Uncharacterized protein.	Uncharacterized protein.	0.907
Impad1	cdipt	ENSCMIP00000043703	ENSCMIP00000043433	Uncharacterized protein.	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.925
Impad1	impa1	ENSCMIP00000043703	ENSCMIP00000002330	Uncharacterized protein.	Inositol-1-monophosphatase.	0.955
Impad1	inpp1	ENSCMIP00000043703	ENSCMIP00000035969	Uncharacterized protein.	Inositol polyphosphate 1-phosphatase-like protein.	0.904
Impad1	inpp4a	ENSCMIP00000043703	ENSCMIP00000043283	Uncharacterized protein.	Uncharacterized protein.	0.900
Impad1	isyna1	ENSCMIP00000043703	ENSCMIP00000011502	Uncharacterized protein.	Inos-1-P_synth domain-containing protein.	0.694
LOC103190839	Impad1	ENSCMIP00000030575	ENSCMIP00000043703	Uncharacterized protein.	Uncharacterized protein.	0.901
LOC103190839	aldh18a1	ENSCMIP00000030575	ENSCMIP00000029682	Uncharacterized protein.	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	0.552
LOC103190839	bpnt1	ENSCMIP00000030575	ENSCMIP00000043721	Uncharacterized protein.	Uncharacterized protein.	0.913
LOC103190839	cdipt	ENSCMIP00000030575	ENSCMIP00000043433	Uncharacterized protein.	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.925
LOC103190839	impa1	ENSCMIP00000030575	ENSCMIP00000002330	Uncharacterized protein.	Inositol-1-monophosphatase.	0.955
LOC103190839	inpp1	ENSCMIP00000030575	ENSCMIP00000035969	Uncharacterized protein.	Inositol polyphosphate 1-phosphatase-like protein.	0.904
LOC103190839	inpp4a	ENSCMIP00000030575	ENSCMIP00000043283	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC103190839	isyna1	ENSCMIP00000030575	ENSCMIP00000011502	Uncharacterized protein.	Inos-1-P_synth domain-containing protein.	0.694
aldh18a1	Impad1	ENSCMIP00000029682	ENSCMIP00000043703	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Uncharacterized protein.	0.552
aldh18a1	LOC103190839	ENSCMIP00000029682	ENSCMIP00000030575	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Uncharacterized protein.	0.552
aldh18a1	bpnt1	ENSCMIP00000029682	ENSCMIP00000043721	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Uncharacterized protein.	0.552
aldh18a1	cth	ENSCMIP00000029682	ENSCMIP00000001829	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Uncharacterized protein.	0.708