uba5 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

uba5

ThiF domain-containing protein. (377 aa)

Predicted Functional Partners:

ufm1

0.996

Ufc1

0.995

boll

0.962

gabarapl2

0.953

sec63

0.929

ufl1

0.890

uba3

0.850

ufsp2

0.843

cdc20

0.820

cdc20b

0.820

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ufc1	uba3	ENSCMIP00000016351	ENSCMIP00000014509	Uncharacterized protein.	Ubiquitin-activating enzyme 3.	0.465
Ufc1	uba5	ENSCMIP00000016351	ENSCMIP00000011529	Uncharacterized protein.	ThiF domain-containing protein.	0.995
Ufc1	ufl1	ENSCMIP00000016351	ENSCMIP00000036616	Uncharacterized protein.	Uncharacterized protein.	0.987
Ufc1	ufm1	ENSCMIP00000016351	ENSCMIP00000044915	Uncharacterized protein.	Ubiquitin-fold modifier 1; Ubiquitin-like modifier which can be covalently attached to substrate proteins as a monomer or a lysine-linked polymer in a post- translational process called ufmylation. Ufmylation on lysine residues of proteins may play a crucial role in a number of cellular processes.	0.997
Ufc1	ufsp2	ENSCMIP00000016351	ENSCMIP00000034962	Uncharacterized protein.	Uncharacterized protein.	0.850
boll	cdc20	ENSCMIP00000029628	ENSCMIP00000007661	RRM domain-containing protein.	Cell division cycle 20-like protein.	0.778
boll	cdc20b	ENSCMIP00000029628	ENSCMIP00000048337	RRM domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.778
boll	uba5	ENSCMIP00000029628	ENSCMIP00000011529	RRM domain-containing protein.	ThiF domain-containing protein.	0.962
cdc20	boll	ENSCMIP00000007661	ENSCMIP00000029628	Cell division cycle 20-like protein.	RRM domain-containing protein.	0.778
cdc20	cdc20b	ENSCMIP00000007661	ENSCMIP00000048337	Cell division cycle 20-like protein.	WD_REPEATS_REGION domain-containing protein.	0.902
cdc20	uba5	ENSCMIP00000007661	ENSCMIP00000011529	Cell division cycle 20-like protein.	ThiF domain-containing protein.	0.820
cdc20b	boll	ENSCMIP00000048337	ENSCMIP00000029628	WD_REPEATS_REGION domain-containing protein.	RRM domain-containing protein.	0.778
cdc20b	cdc20	ENSCMIP00000048337	ENSCMIP00000007661	WD_REPEATS_REGION domain-containing protein.	Cell division cycle 20-like protein.	0.902
cdc20b	uba5	ENSCMIP00000048337	ENSCMIP00000011529	WD_REPEATS_REGION domain-containing protein.	ThiF domain-containing protein.	0.820
gabarapl2	uba3	ENSCMIP00000034498	ENSCMIP00000014509	Uncharacterized protein.	Ubiquitin-activating enzyme 3.	0.607
gabarapl2	uba5	ENSCMIP00000034498	ENSCMIP00000011529	Uncharacterized protein.	ThiF domain-containing protein.	0.953
gabarapl2	ufl1	ENSCMIP00000034498	ENSCMIP00000036616	Uncharacterized protein.	Uncharacterized protein.	0.445
gabarapl2	ufm1	ENSCMIP00000034498	ENSCMIP00000044915	Uncharacterized protein.	Ubiquitin-fold modifier 1; Ubiquitin-like modifier which can be covalently attached to substrate proteins as a monomer or a lysine-linked polymer in a post- translational process called ufmylation. Ufmylation on lysine residues of proteins may play a crucial role in a number of cellular processes.	0.528
sec63	uba5	ENSCMIP00000035852	ENSCMIP00000011529	Translocation protein SEC63-like protein.	ThiF domain-containing protein.	0.929
sec63	ufl1	ENSCMIP00000035852	ENSCMIP00000036616	Translocation protein SEC63-like protein.	Uncharacterized protein.	0.525