chm protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

chm

Uncharacterized protein. (689 aa)

Predicted Functional Partners:

ENSCMIP00000004945

0.981

rab7a

0.969

LOC103184088

0.963

rabgef1

0.963

rabggtb

0.958

ptar1

0.929

rab1a

0.815

rab14

0.789

rab9a

0.771

Rab2a

0.748

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000004945	LOC103184088	ENSCMIP00000004945	ENSCMIP00000038834	Uncharacterized protein.	VPS9 domain-containing protein.	0.417
ENSCMIP00000004945	Rab2a	ENSCMIP00000004945	ENSCMIP00000044224	Uncharacterized protein.	Ras-related protein Rab-2A.	0.637
ENSCMIP00000004945	chm	ENSCMIP00000004945	ENSCMIP00000011599	Uncharacterized protein.	Uncharacterized protein.	0.981
ENSCMIP00000004945	rab14	ENSCMIP00000004945	ENSCMIP00000032123	Uncharacterized protein.	Uncharacterized protein.	0.615
ENSCMIP00000004945	rab1a	ENSCMIP00000004945	ENSCMIP00000049197	Uncharacterized protein.	Uncharacterized protein.	0.843
ENSCMIP00000004945	rab7a	ENSCMIP00000004945	ENSCMIP00000047360	Uncharacterized protein.	Uncharacterized protein.	0.534
ENSCMIP00000004945	rab9a	ENSCMIP00000004945	ENSCMIP00000021885	Uncharacterized protein.	Ras-related protein Rab-9A-like protein.	0.749
ENSCMIP00000004945	rabgef1	ENSCMIP00000004945	ENSCMIP00000042878	Uncharacterized protein.	Rab5 GDP/GTP exchange factor-like protein.	0.417
ENSCMIP00000004945	rabggtb	ENSCMIP00000004945	ENSCMIP00000021008	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.999
LOC103184088	ENSCMIP00000004945	ENSCMIP00000038834	ENSCMIP00000004945	VPS9 domain-containing protein.	Uncharacterized protein.	0.417
LOC103184088	chm	ENSCMIP00000038834	ENSCMIP00000011599	VPS9 domain-containing protein.	Uncharacterized protein.	0.963
LOC103184088	rab9a	ENSCMIP00000038834	ENSCMIP00000021885	VPS9 domain-containing protein.	Ras-related protein Rab-9A-like protein.	0.623
LOC103184088	rabgef1	ENSCMIP00000038834	ENSCMIP00000042878	VPS9 domain-containing protein.	Rab5 GDP/GTP exchange factor-like protein.	0.636
Rab2a	ENSCMIP00000004945	ENSCMIP00000044224	ENSCMIP00000004945	Ras-related protein Rab-2A.	Uncharacterized protein.	0.637
Rab2a	chm	ENSCMIP00000044224	ENSCMIP00000011599	Ras-related protein Rab-2A.	Uncharacterized protein.	0.748
Rab2a	ptar1	ENSCMIP00000044224	ENSCMIP00000023280	Ras-related protein Rab-2A.	Uncharacterized protein.	0.634
Rab2a	rab14	ENSCMIP00000044224	ENSCMIP00000032123	Ras-related protein Rab-2A.	Uncharacterized protein.	0.573
Rab2a	rab1a	ENSCMIP00000044224	ENSCMIP00000049197	Ras-related protein Rab-2A.	Uncharacterized protein.	0.582
Rab2a	rab9a	ENSCMIP00000044224	ENSCMIP00000021885	Ras-related protein Rab-2A.	Ras-related protein Rab-9A-like protein.	0.606
Rab2a	rabggtb	ENSCMIP00000044224	ENSCMIP00000021008	Ras-related protein Rab-2A.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.830