Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mrpl57Uncharacterized protein. (104 aa)    
Predicted Functional Partners:
Ndufab1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
  0.975
mrpl1
Mitochondrial ribosomal protein L1.
    
 
 0.952
mrpl52
Uncharacterized protein.
   
 
 0.945
mrpl41
Uncharacterized protein.
   
 
 0.940
mrpl28
Uncharacterized protein.
    
   0.934
mrpl30
Ribosomal_L30 domain-containing protein.
   
   0.933
Mrpl43
L51_S25_CI-B8 domain-containing protein.
   
 
 0.930
mrpl47
Uncharacterized protein.
   
 
 0.928
mrps30
Uncharacterized protein.
   
   0.925
mrpl49
39S ribosomal protein L49, mitochondrial-like protein.
   
 
 0.924
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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