lyrm7 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

lyrm7

Uncharacterized protein. (114 aa)

Predicted Functional Partners:

ubxn7

0.901

ENSCMIP00000025885

0.731

mrpl27

0.730

LOC103186042

0.728

mrpl3

0.728

LOC103176055

0.726

mrpl22

0.724

mrpl47

0.712

mrpl33

0.711

mrpl30

0.698

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000025885	LOC103186042	ENSCMIP00000025885	ENSCMIP00000017652	Uncharacterized protein.	Uncharacterized protein.	0.992
ENSCMIP00000025885	lyrm7	ENSCMIP00000025885	ENSCMIP00000011678	Uncharacterized protein.	Uncharacterized protein.	0.731
ENSCMIP00000025885	mrpl22	ENSCMIP00000025885	ENSCMIP00000040676	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.994
ENSCMIP00000025885	mrpl27	ENSCMIP00000025885	ENSCMIP00000000271	Uncharacterized protein.	Uncharacterized protein.	0.995
ENSCMIP00000025885	mrpl3	ENSCMIP00000025885	ENSCMIP00000021244	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.992
ENSCMIP00000025885	mrpl30	ENSCMIP00000025885	ENSCMIP00000000695	Uncharacterized protein.	Ribosomal_L30 domain-containing protein.	0.979
ENSCMIP00000025885	mrpl33	ENSCMIP00000025885	ENSCMIP00000037086	Uncharacterized protein.	Mitochondrial 39S ribosomal protein l33.	0.988
ENSCMIP00000025885	mrpl47	ENSCMIP00000025885	ENSCMIP00000005205	Uncharacterized protein.	Uncharacterized protein.	0.993
LOC103176055	lyrm7	ENSCMIP00000037636	ENSCMIP00000011678	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Uncharacterized protein.	0.726
LOC103176055	mrpl27	ENSCMIP00000037636	ENSCMIP00000000271	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Uncharacterized protein.	0.464
LOC103186042	ENSCMIP00000025885	ENSCMIP00000017652	ENSCMIP00000025885	Uncharacterized protein.	Uncharacterized protein.	0.992
LOC103186042	lyrm7	ENSCMIP00000017652	ENSCMIP00000011678	Uncharacterized protein.	Uncharacterized protein.	0.728
LOC103186042	mrpl22	ENSCMIP00000017652	ENSCMIP00000040676	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.991
LOC103186042	mrpl27	ENSCMIP00000017652	ENSCMIP00000000271	Uncharacterized protein.	Uncharacterized protein.	0.993
LOC103186042	mrpl3	ENSCMIP00000017652	ENSCMIP00000021244	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.992
LOC103186042	mrpl30	ENSCMIP00000017652	ENSCMIP00000000695	Uncharacterized protein.	Ribosomal_L30 domain-containing protein.	0.993
LOC103186042	mrpl33	ENSCMIP00000017652	ENSCMIP00000037086	Uncharacterized protein.	Mitochondrial 39S ribosomal protein l33.	0.984
LOC103186042	mrpl47	ENSCMIP00000017652	ENSCMIP00000005205	Uncharacterized protein.	Uncharacterized protein.	0.995
lyrm7	ENSCMIP00000025885	ENSCMIP00000011678	ENSCMIP00000025885	Uncharacterized protein.	Uncharacterized protein.	0.731
lyrm7	LOC103176055	ENSCMIP00000011678	ENSCMIP00000037636	Uncharacterized protein.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.726