Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
spg21AB hydrolase-1 domain-containing protein. (305 aa)    
Predicted Functional Partners:
atpaf2
ATP synthase mitochondrial F1 complex assembly factor 2.
   
   0.893
shcbp1
Beta_helix domain-containing protein.
      
 0.874
b3galt2
Hexosyltransferase.
      
 0.824
spg11
Spatacsin_C domain-containing protein.
      
 0.793
rab7a
Uncharacterized protein.
    
   0.770
vamp7
Uncharacterized protein; Belongs to the synaptobrevin family.
    
   0.769
LOC103177453
Uncharacterized protein.
      
 0.744
spg7
AAA domain-containing protein.
      
 0.720
ap5z1
Uncharacterized protein.
      
 0.669
spart
MIT domain-containing protein.
      
 0.669
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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