STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spg21AB hydrolase-1 domain-containing protein. (305 aa)    
Predicted Functional Partners:
tecpr2
Uncharacterized protein.
      
 0.678
spg11
Spatacsin_C domain-containing protein.
      
 0.658
spart
MIT domain-containing protein.
      
 0.625
LOC103177453
Uncharacterized protein.
      
 0.590
spg7
AAA domain-containing protein.
      
 0.581
paaf1
WD_REPEATS_REGION domain-containing protein.
      
 0.553
ap5z1
Uncharacterized protein.
      
 0.550
nipa1
Magnesium transporter NIPA1-like protein.
      
 0.457
lyrm4
Uncharacterized protein; Belongs to the complex I LYR family.
      
 0.450
LOC103189287
TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.
      
 0.447
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.