STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pym1Mago-bind domain-containing protein. (221 aa)    
Predicted Functional Partners:
ENSCMIP00000031900
RRM domain-containing protein.
    
 
 0.993
eif4a3
Uncharacterized protein; Belongs to the DEAD box helicase family.
    
 
 0.661
suox
Cytochrome b5 heme-binding domain-containing protein.
      
 0.611
aar2
Uncharacterized protein.
   
  
 0.567
sec63
Translocation protein SEC63-like protein.
      
 0.553
vsir
Ig-like domain-containing protein.
   
    0.535
stoml2
PHB domain-containing protein.
      
 0.512
upf2
Uncharacterized protein.
      
 0.474
mgme1
Mitochondrial genome maintenance exonuclease 1; Metal-dependent single-stranded DNA (ssDNA) exonuclease involved in mitochondrial genome maintenance. Has preference for 5'-3' exonuclease activity. Necessary for maintenance of proper 7S DNA levels. Probably involved in mitochondrial DNA (mtDNA) repair. Belongs to the MGME1 family.
      
 0.468
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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