pym1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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co-expression

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[Homology]

Score

pym1

Mago-bind domain-containing protein. (221 aa)

Predicted Functional Partners:

ENSCMIP00000031900

0.985

casc3

0.974

eif4a3

0.955

rtn4ip1

0.921

upf2

0.774

upf3b

0.646

ENSCMIP00000033691

0.646

LOC103185776

0.646

cryzl1

0.631

myo6

0.619

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000031900	ENSCMIP00000033691	ENSCMIP00000031900	ENSCMIP00000033691	RRM domain-containing protein.	Smg4_UPF3 domain-containing protein.	0.926
ENSCMIP00000031900	LOC103185776	ENSCMIP00000031900	ENSCMIP00000039029	RRM domain-containing protein.	Smg4_UPF3 domain-containing protein.	0.926
ENSCMIP00000031900	casc3	ENSCMIP00000031900	ENSCMIP00000029615	RRM domain-containing protein.	Btz domain-containing protein.	0.995
ENSCMIP00000031900	eif4a3	ENSCMIP00000031900	ENSCMIP00000011072	RRM domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.997
ENSCMIP00000031900	pym1	ENSCMIP00000031900	ENSCMIP00000011802	RRM domain-containing protein.	Mago-bind domain-containing protein.	0.985
ENSCMIP00000031900	upf2	ENSCMIP00000031900	ENSCMIP00000028512	RRM domain-containing protein.	Uncharacterized protein.	0.995
ENSCMIP00000031900	upf3b	ENSCMIP00000031900	ENSCMIP00000033686	RRM domain-containing protein.	Uncharacterized protein.	0.926
ENSCMIP00000033691	ENSCMIP00000031900	ENSCMIP00000033691	ENSCMIP00000031900	Smg4_UPF3 domain-containing protein.	RRM domain-containing protein.	0.926
ENSCMIP00000033691	casc3	ENSCMIP00000033691	ENSCMIP00000029615	Smg4_UPF3 domain-containing protein.	Btz domain-containing protein.	0.892
ENSCMIP00000033691	eif4a3	ENSCMIP00000033691	ENSCMIP00000011072	Smg4_UPF3 domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.930
ENSCMIP00000033691	pym1	ENSCMIP00000033691	ENSCMIP00000011802	Smg4_UPF3 domain-containing protein.	Mago-bind domain-containing protein.	0.646
ENSCMIP00000033691	upf2	ENSCMIP00000033691	ENSCMIP00000028512	Smg4_UPF3 domain-containing protein.	Uncharacterized protein.	0.948
ENSCMIP00000033691	upf3b	ENSCMIP00000033691	ENSCMIP00000033686	Smg4_UPF3 domain-containing protein.	Uncharacterized protein.	0.862
LOC103185776	ENSCMIP00000031900	ENSCMIP00000039029	ENSCMIP00000031900	Smg4_UPF3 domain-containing protein.	RRM domain-containing protein.	0.926
LOC103185776	casc3	ENSCMIP00000039029	ENSCMIP00000029615	Smg4_UPF3 domain-containing protein.	Btz domain-containing protein.	0.892
LOC103185776	eif4a3	ENSCMIP00000039029	ENSCMIP00000011072	Smg4_UPF3 domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.930
LOC103185776	pym1	ENSCMIP00000039029	ENSCMIP00000011802	Smg4_UPF3 domain-containing protein.	Mago-bind domain-containing protein.	0.646
LOC103185776	upf2	ENSCMIP00000039029	ENSCMIP00000028512	Smg4_UPF3 domain-containing protein.	Uncharacterized protein.	0.989
LOC103185776	upf3b	ENSCMIP00000039029	ENSCMIP00000033686	Smg4_UPF3 domain-containing protein.	Uncharacterized protein.	0.900
casc3	ENSCMIP00000031900	ENSCMIP00000029615	ENSCMIP00000031900	Btz domain-containing protein.	RRM domain-containing protein.	0.995