smpd2 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

smpd2

Sphingomyelin phosphodiesterase 2-like protein. (410 aa)

Predicted Functional Partners:

ugcg

0.967

smpd3

0.957

sgms2

0.950

sgms1

0.950

gba2

0.946

samd8

0.942

degs2

0.939

degs1

0.939

LOC103179174

0.935

cerk

0.935

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103179174	cerk	ENSCMIP00000004125	ENSCMIP00000038369	DAGKc domain-containing protein.	DAGKc domain-containing protein.	0.902
LOC103179174	degs1	ENSCMIP00000004125	ENSCMIP00000041625	DAGKc domain-containing protein.	FA_desaturase domain-containing protein.	0.930
LOC103179174	degs2	ENSCMIP00000004125	ENSCMIP00000036291	DAGKc domain-containing protein.	Lipid_DES domain-containing protein.	0.930
LOC103179174	gba2	ENSCMIP00000004125	ENSCMIP00000028109	DAGKc domain-containing protein.	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	0.942
LOC103179174	samd8	ENSCMIP00000004125	ENSCMIP00000020269	DAGKc domain-containing protein.	SAM domain-containing protein.	0.933
LOC103179174	sgms1	ENSCMIP00000004125	ENSCMIP00000046686	DAGKc domain-containing protein.	Phosphatidylcholine:ceramide cholinephosphotransferase 1.	0.933
LOC103179174	sgms2	ENSCMIP00000004125	ENSCMIP00000031379	DAGKc domain-containing protein.	Phosphatidylcholine:ceramide cholinephosphotransferase 2.	0.933
LOC103179174	smpd2	ENSCMIP00000004125	ENSCMIP00000011819	DAGKc domain-containing protein.	Sphingomyelin phosphodiesterase 2-like protein.	0.935
LOC103179174	smpd3	ENSCMIP00000004125	ENSCMIP00000013780	DAGKc domain-containing protein.	Uncharacterized protein.	0.921
LOC103179174	ugcg	ENSCMIP00000004125	ENSCMIP00000021577	DAGKc domain-containing protein.	Ceramide glucosyltransferase.	0.952
cerk	LOC103179174	ENSCMIP00000038369	ENSCMIP00000004125	DAGKc domain-containing protein.	DAGKc domain-containing protein.	0.902
cerk	degs1	ENSCMIP00000038369	ENSCMIP00000041625	DAGKc domain-containing protein.	FA_desaturase domain-containing protein.	0.930
cerk	degs2	ENSCMIP00000038369	ENSCMIP00000036291	DAGKc domain-containing protein.	Lipid_DES domain-containing protein.	0.930
cerk	gba2	ENSCMIP00000038369	ENSCMIP00000028109	DAGKc domain-containing protein.	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	0.942
cerk	samd8	ENSCMIP00000038369	ENSCMIP00000020269	DAGKc domain-containing protein.	SAM domain-containing protein.	0.933
cerk	sgms1	ENSCMIP00000038369	ENSCMIP00000046686	DAGKc domain-containing protein.	Phosphatidylcholine:ceramide cholinephosphotransferase 1.	0.933
cerk	sgms2	ENSCMIP00000038369	ENSCMIP00000031379	DAGKc domain-containing protein.	Phosphatidylcholine:ceramide cholinephosphotransferase 2.	0.933
cerk	smpd2	ENSCMIP00000038369	ENSCMIP00000011819	DAGKc domain-containing protein.	Sphingomyelin phosphodiesterase 2-like protein.	0.935
cerk	smpd3	ENSCMIP00000038369	ENSCMIP00000013780	DAGKc domain-containing protein.	Uncharacterized protein.	0.921
cerk	ugcg	ENSCMIP00000038369	ENSCMIP00000021577	DAGKc domain-containing protein.	Ceramide glucosyltransferase.	0.952