bbs2 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

bbs2

Bardet-Biedl syndrome 2 protein homolog. (724 aa)

Predicted Functional Partners:

ttc8

0.999

Bbs1

0.999

bbs7

0.999

bbs4

0.999

bbs9

0.999

lztfl1

0.996

bbs5

0.973

bbip1

0.962

klhl40

0.945

klhl41

0.945

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Bbs1	bbip1	ENSCMIP00000012803	ENSCMIP00000045478	BBS1 domain-containing protein.	Uncharacterized protein.	0.965
Bbs1	bbs2	ENSCMIP00000012803	ENSCMIP00000011835	BBS1 domain-containing protein.	Bardet-Biedl syndrome 2 protein homolog.	0.999
Bbs1	bbs4	ENSCMIP00000012803	ENSCMIP00000023811	BBS1 domain-containing protein.	Bardet-Biedl syndrome 4 protein.	0.999
Bbs1	bbs5	ENSCMIP00000012803	ENSCMIP00000025937	BBS1 domain-containing protein.	Bardet-Biedl syndrome 5 protein homolog; Required for ciliogenesis; Belongs to the BBS5 family.	0.975
Bbs1	bbs7	ENSCMIP00000012803	ENSCMIP00000019829	BBS1 domain-containing protein.	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	0.999
Bbs1	bbs9	ENSCMIP00000012803	ENSCMIP00000035601	BBS1 domain-containing protein.	Uncharacterized protein.	0.999
Bbs1	klhl40	ENSCMIP00000012803	ENSCMIP00000019613	BBS1 domain-containing protein.	Uncharacterized protein.	0.938
Bbs1	klhl41	ENSCMIP00000012803	ENSCMIP00000025688	BBS1 domain-containing protein.	Kelch repeat and BTB (POZ) domain-containing 10.	0.938
Bbs1	lztfl1	ENSCMIP00000012803	ENSCMIP00000033449	BBS1 domain-containing protein.	Leucine zipper transcription factor-like protein 1.	0.982
Bbs1	ttc8	ENSCMIP00000012803	ENSCMIP00000006448	BBS1 domain-containing protein.	TPR_REGION domain-containing protein.	0.999
bbip1	Bbs1	ENSCMIP00000045478	ENSCMIP00000012803	Uncharacterized protein.	BBS1 domain-containing protein.	0.965
bbip1	bbs2	ENSCMIP00000045478	ENSCMIP00000011835	Uncharacterized protein.	Bardet-Biedl syndrome 2 protein homolog.	0.962
bbip1	bbs4	ENSCMIP00000045478	ENSCMIP00000023811	Uncharacterized protein.	Bardet-Biedl syndrome 4 protein.	0.789
bbip1	bbs5	ENSCMIP00000045478	ENSCMIP00000025937	Uncharacterized protein.	Bardet-Biedl syndrome 5 protein homolog; Required for ciliogenesis; Belongs to the BBS5 family.	0.851
bbip1	bbs7	ENSCMIP00000045478	ENSCMIP00000019829	Uncharacterized protein.	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	0.970
bbip1	bbs9	ENSCMIP00000045478	ENSCMIP00000035601	Uncharacterized protein.	Uncharacterized protein.	0.969
bbip1	klhl40	ENSCMIP00000045478	ENSCMIP00000019613	Uncharacterized protein.	Uncharacterized protein.	0.691
bbip1	klhl41	ENSCMIP00000045478	ENSCMIP00000025688	Uncharacterized protein.	Kelch repeat and BTB (POZ) domain-containing 10.	0.691
bbip1	lztfl1	ENSCMIP00000045478	ENSCMIP00000033449	Uncharacterized protein.	Leucine zipper transcription factor-like protein 1.	0.714
bbip1	ttc8	ENSCMIP00000045478	ENSCMIP00000006448	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.957