ccdc181 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ccdc181

Uncharacterized protein. (507 aa)

Predicted Functional Partners:

Ppp1r32

0.891

mrpl30

0.849

cfap100

0.677

LOC103178459

0.672

ccdc113

0.670

znf706

0.652

cfap58

0.652

rassf3

0.651

drc7

0.651

wdr78

0.630

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103178459	ccdc113	ENSCMIP00000043908	ENSCMIP00000012160	Uncharacterized protein.	DUF4201 domain-containing protein.	0.654
LOC103178459	ccdc181	ENSCMIP00000043908	ENSCMIP00000011848	Uncharacterized protein.	Uncharacterized protein.	0.672
LOC103178459	cfap100	ENSCMIP00000043908	ENSCMIP00000047761	Uncharacterized protein.	Coiled-coil domain-containing protein 37-like protein.	0.597
LOC103178459	cfap58	ENSCMIP00000043908	ENSCMIP00000046344	Uncharacterized protein.	Uncharacterized protein.	0.495
LOC103178459	drc7	ENSCMIP00000043908	ENSCMIP00000038099	Uncharacterized protein.	Uncharacterized protein.	0.522
LOC103178459	wdr78	ENSCMIP00000043908	ENSCMIP00000036987	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.647
Ppp1r32	ccdc113	ENSCMIP00000027240	ENSCMIP00000012160	Uncharacterized protein.	DUF4201 domain-containing protein.	0.604
Ppp1r32	ccdc181	ENSCMIP00000027240	ENSCMIP00000011848	Uncharacterized protein.	Uncharacterized protein.	0.891
Ppp1r32	cfap100	ENSCMIP00000027240	ENSCMIP00000047761	Uncharacterized protein.	Coiled-coil domain-containing protein 37-like protein.	0.604
Ppp1r32	drc7	ENSCMIP00000027240	ENSCMIP00000038099	Uncharacterized protein.	Uncharacterized protein.	0.625
Ppp1r32	wdr78	ENSCMIP00000027240	ENSCMIP00000036987	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.604
ccdc113	LOC103178459	ENSCMIP00000012160	ENSCMIP00000043908	DUF4201 domain-containing protein.	Uncharacterized protein.	0.654
ccdc113	Ppp1r32	ENSCMIP00000012160	ENSCMIP00000027240	DUF4201 domain-containing protein.	Uncharacterized protein.	0.604
ccdc113	ccdc181	ENSCMIP00000012160	ENSCMIP00000011848	DUF4201 domain-containing protein.	Uncharacterized protein.	0.670
ccdc113	cfap100	ENSCMIP00000012160	ENSCMIP00000047761	DUF4201 domain-containing protein.	Coiled-coil domain-containing protein 37-like protein.	0.950
ccdc113	cfap58	ENSCMIP00000012160	ENSCMIP00000046344	DUF4201 domain-containing protein.	Uncharacterized protein.	0.781
ccdc113	drc7	ENSCMIP00000012160	ENSCMIP00000038099	DUF4201 domain-containing protein.	Uncharacterized protein.	0.905
ccdc113	wdr78	ENSCMIP00000012160	ENSCMIP00000036987	DUF4201 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.877
ccdc181	LOC103178459	ENSCMIP00000011848	ENSCMIP00000043908	Uncharacterized protein.	Uncharacterized protein.	0.672
ccdc181	Ppp1r32	ENSCMIP00000011848	ENSCMIP00000027240	Uncharacterized protein.	Uncharacterized protein.	0.891