Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gcatAminotran_1_2 domain-containing protein. (429 aa)    
Predicted Functional Partners:
LOC103185786
Epimerase domain-containing protein.
 
 
 0.968
LOC103175555
Beta_elim_lyase domain-containing protein.
  
 
 0.963
agxt
Serine--pyruvate aminotransferase.
    
 0.957
gldc
Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.
  
 
 0.939
sardh
Uncharacterized protein.
  
 
 0.938
gnmt
Glycine N-methyltransferase.
   
 
 0.937
pipox
DAO domain-containing protein.
  
 
 0.932
shmt1
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
  
 
 0.929
shmt2
Serine hydroxymethyltransferase, mitochondrial-like protein.
  
 
 0.929
alas1
5-aminolevulinate synthase.
  
  
 
0.912
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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