arhgap29 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Experiments

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[Homology]

Score

arhgap29

Uncharacterized protein. (1330 aa)

Predicted Functional Partners:

rhoc

0.952

rhoa

0.952

cdc42

0.691

ENSCMIP00000036907

0.543

ENSCMIP00000003261

0.536

rnd3

0.536

amotl2

0.476

rac1

0.462

LOC103191021

0.462

rac3

0.462

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000003261	ENSCMIP00000036907	ENSCMIP00000003261	ENSCMIP00000036907	Uncharacterized protein.	Uncharacterized protein.	0.480
ENSCMIP00000003261	LOC103191021	ENSCMIP00000003261	ENSCMIP00000021483	Uncharacterized protein.	Uncharacterized protein.	0.515
ENSCMIP00000003261	arhgap29	ENSCMIP00000003261	ENSCMIP00000012003	Uncharacterized protein.	Uncharacterized protein.	0.536
ENSCMIP00000003261	cdc42	ENSCMIP00000003261	ENSCMIP00000003700	Uncharacterized protein.	Cell division control protein 42-like protein.	0.515
ENSCMIP00000003261	rac1	ENSCMIP00000003261	ENSCMIP00000014308	Uncharacterized protein.	Uncharacterized protein.	0.515
ENSCMIP00000003261	rac3	ENSCMIP00000003261	ENSCMIP00000044273	Uncharacterized protein.	Uncharacterized protein.	0.515
ENSCMIP00000036907	ENSCMIP00000003261	ENSCMIP00000036907	ENSCMIP00000003261	Uncharacterized protein.	Uncharacterized protein.	0.480
ENSCMIP00000036907	LOC103191021	ENSCMIP00000036907	ENSCMIP00000021483	Uncharacterized protein.	Uncharacterized protein.	0.589
ENSCMIP00000036907	arhgap29	ENSCMIP00000036907	ENSCMIP00000012003	Uncharacterized protein.	Uncharacterized protein.	0.543
ENSCMIP00000036907	cdc42	ENSCMIP00000036907	ENSCMIP00000003700	Uncharacterized protein.	Cell division control protein 42-like protein.	0.628
ENSCMIP00000036907	rac1	ENSCMIP00000036907	ENSCMIP00000014308	Uncharacterized protein.	Uncharacterized protein.	0.589
ENSCMIP00000036907	rac3	ENSCMIP00000036907	ENSCMIP00000044273	Uncharacterized protein.	Uncharacterized protein.	0.589
LOC103191021	ENSCMIP00000003261	ENSCMIP00000021483	ENSCMIP00000003261	Uncharacterized protein.	Uncharacterized protein.	0.515
LOC103191021	ENSCMIP00000036907	ENSCMIP00000021483	ENSCMIP00000036907	Uncharacterized protein.	Uncharacterized protein.	0.589
LOC103191021	arhgap29	ENSCMIP00000021483	ENSCMIP00000012003	Uncharacterized protein.	Uncharacterized protein.	0.462
LOC103191021	cdc42	ENSCMIP00000021483	ENSCMIP00000003700	Uncharacterized protein.	Cell division control protein 42-like protein.	0.836
LOC103191021	rac1	ENSCMIP00000021483	ENSCMIP00000014308	Uncharacterized protein.	Uncharacterized protein.	0.901
LOC103191021	rac3	ENSCMIP00000021483	ENSCMIP00000044273	Uncharacterized protein.	Uncharacterized protein.	0.901
LOC103191021	rhoa	ENSCMIP00000021483	ENSCMIP00000043905	Uncharacterized protein.	Uncharacterized protein.	0.958
LOC103191021	rhoc	ENSCMIP00000021483	ENSCMIP00000031196	Uncharacterized protein.	Uncharacterized protein.	0.958