kxd1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

kxd1

KxDL domain-containing protein. (189 aa)

Predicted Functional Partners:

bloc1s2

0.986

borcs8

0.986

ENSCMIP00000049273

0.986

borcs5

0.978

Bloc1s1

0.972

uba52

0.947

lrrc45

0.923

Ubc

0.884

rnf4

0.791

rps27a

0.704

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Bloc1s1	ENSCMIP00000049273	ENSCMIP00000043702	ENSCMIP00000049273	Uncharacterized protein.	Uncharacterized protein.	0.955
Bloc1s1	bloc1s2	ENSCMIP00000043702	ENSCMIP00000005668	Uncharacterized protein.	Uncharacterized protein.	0.998
Bloc1s1	borcs5	ENSCMIP00000043702	ENSCMIP00000020618	Uncharacterized protein.	Uncharacterized protein.	0.956
Bloc1s1	borcs8	ENSCMIP00000043702	ENSCMIP00000009685	Uncharacterized protein.	Uncharacterized protein.	0.973
Bloc1s1	kxd1	ENSCMIP00000043702	ENSCMIP00000012046	Uncharacterized protein.	KxDL domain-containing protein.	0.972
ENSCMIP00000049273	Bloc1s1	ENSCMIP00000049273	ENSCMIP00000043702	Uncharacterized protein.	Uncharacterized protein.	0.955
ENSCMIP00000049273	bloc1s2	ENSCMIP00000049273	ENSCMIP00000005668	Uncharacterized protein.	Uncharacterized protein.	0.978
ENSCMIP00000049273	borcs5	ENSCMIP00000049273	ENSCMIP00000020618	Uncharacterized protein.	Uncharacterized protein.	0.987
ENSCMIP00000049273	borcs8	ENSCMIP00000049273	ENSCMIP00000009685	Uncharacterized protein.	Uncharacterized protein.	0.994
ENSCMIP00000049273	kxd1	ENSCMIP00000049273	ENSCMIP00000012046	Uncharacterized protein.	KxDL domain-containing protein.	0.986
Ubc	kxd1	ENSCMIP00000028897	ENSCMIP00000012046	Ubiquitin-like domain-containing protein.	KxDL domain-containing protein.	0.884
Ubc	rnf4	ENSCMIP00000028897	ENSCMIP00000038749	Ubiquitin-like domain-containing protein.	Ring finger protein 4.	0.873
Ubc	rps27a	ENSCMIP00000028897	ENSCMIP00000006356	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.992
Ubc	uba52	ENSCMIP00000028897	ENSCMIP00000012025	Ubiquitin-like domain-containing protein.	Ribosomal protein L40-like isoform 1.	0.996
bloc1s2	Bloc1s1	ENSCMIP00000005668	ENSCMIP00000043702	Uncharacterized protein.	Uncharacterized protein.	0.998
bloc1s2	ENSCMIP00000049273	ENSCMIP00000005668	ENSCMIP00000049273	Uncharacterized protein.	Uncharacterized protein.	0.978
bloc1s2	borcs5	ENSCMIP00000005668	ENSCMIP00000020618	Uncharacterized protein.	Uncharacterized protein.	0.952
bloc1s2	borcs8	ENSCMIP00000005668	ENSCMIP00000009685	Uncharacterized protein.	Uncharacterized protein.	0.963
bloc1s2	kxd1	ENSCMIP00000005668	ENSCMIP00000012046	Uncharacterized protein.	KxDL domain-containing protein.	0.986
borcs5	Bloc1s1	ENSCMIP00000020618	ENSCMIP00000043702	Uncharacterized protein.	Uncharacterized protein.	0.956