Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103181598Annexin. (543 aa)    
Predicted Functional Partners:
tfg
Protein TFG isoform 1.
   
  0.525
gca
Uncharacterized protein.
   
 
 0.454
LOC103190440
Uncharacterized protein.
   
 
 0.454
ENSCMIP00000012693
Uncharacterized protein.
   
 
 0.435
LOC103182812
Calreticulin.
   
 
 0.435
calr3
Calreticulin.
   
 
 0.431
wdr90
Uncharacterized protein.
   
 
 0.417
pef1
Uncharacterized protein.
   
 
 0.413
pdcd6
Uncharacterized protein.
   
 
 0.413
LOC103174800
Guanylate cyclase.
      
 0.409
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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