nras protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

nras

Uncharacterized protein. (189 aa)

Predicted Functional Partners:

braf

0.985

sos1

0.982

rasa1

0.979

sos2

0.978

nf1

0.973

rassf5

0.951

rasgrp1

0.949

rasgrp3

0.949

rasgrf2

0.943

rapgef2

0.943

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
braf	nf1	ENSCMIP00000048754	ENSCMIP00000023854	Uncharacterized protein.	Uncharacterized protein.	0.517
braf	nras	ENSCMIP00000048754	ENSCMIP00000012077	Uncharacterized protein.	Uncharacterized protein.	0.985
braf	sos1	ENSCMIP00000048754	ENSCMIP00000011491	Uncharacterized protein.	Uncharacterized protein.	0.430
braf	sos2	ENSCMIP00000048754	ENSCMIP00000030432	Uncharacterized protein.	Uncharacterized protein.	0.430
nf1	braf	ENSCMIP00000023854	ENSCMIP00000048754	Uncharacterized protein.	Uncharacterized protein.	0.517
nf1	nras	ENSCMIP00000023854	ENSCMIP00000012077	Uncharacterized protein.	Uncharacterized protein.	0.973
nf1	rasa1	ENSCMIP00000023854	ENSCMIP00000016732	Uncharacterized protein.	Uncharacterized protein.	0.833
nf1	rasgrf2	ENSCMIP00000023854	ENSCMIP00000017467	Uncharacterized protein.	Uncharacterized protein.	0.514
nf1	sos1	ENSCMIP00000023854	ENSCMIP00000011491	Uncharacterized protein.	Uncharacterized protein.	0.579
nf1	sos2	ENSCMIP00000023854	ENSCMIP00000030432	Uncharacterized protein.	Uncharacterized protein.	0.648
nras	braf	ENSCMIP00000012077	ENSCMIP00000048754	Uncharacterized protein.	Uncharacterized protein.	0.985
nras	nf1	ENSCMIP00000012077	ENSCMIP00000023854	Uncharacterized protein.	Uncharacterized protein.	0.973
nras	rapgef2	ENSCMIP00000012077	ENSCMIP00000020987	Uncharacterized protein.	Uncharacterized protein.	0.943
nras	rasa1	ENSCMIP00000012077	ENSCMIP00000016732	Uncharacterized protein.	Uncharacterized protein.	0.979
nras	rasgrf2	ENSCMIP00000012077	ENSCMIP00000017467	Uncharacterized protein.	Uncharacterized protein.	0.943
nras	rasgrp1	ENSCMIP00000012077	ENSCMIP00000014479	Uncharacterized protein.	Uncharacterized protein.	0.949
nras	rasgrp3	ENSCMIP00000012077	ENSCMIP00000047624	Uncharacterized protein.	Uncharacterized protein.	0.949
nras	rassf5	ENSCMIP00000012077	ENSCMIP00000004757	Uncharacterized protein.	Uncharacterized protein.	0.951
nras	sos1	ENSCMIP00000012077	ENSCMIP00000011491	Uncharacterized protein.	Uncharacterized protein.	0.982
nras	sos2	ENSCMIP00000012077	ENSCMIP00000030432	Uncharacterized protein.	Uncharacterized protein.	0.978