STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx49Uncharacterized protein; Belongs to the DEAD box helicase family. (482 aa)    
Predicted Functional Partners:
utp3
Something about silencing protein 10-like protein.
   
 0.995
dhx37
Uncharacterized protein.
   
 0.989
utp25
Digestive organ expansion factor-like protein.
   
 0.983
ddx52
Uncharacterized protein.
  
0.981
utp11
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
 0.979
wdr46
WD_REPEATS_REGION domain-containing protein.
   
 0.978
ddx47
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 
 0.974
dcaf13
WD_REPEATS_REGION domain-containing protein.
   
 0.972
nop14
Uncharacterized protein.
   
 0.972
bysl
Uncharacterized protein.
   
 
 0.970
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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