zfx protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

zfx

Uncharacterized protein. (818 aa)

Predicted Functional Partners:

CYTB

0.670

dctn2

0.670

LOC103186400

0.578

pola1

0.578

cnot3

0.573

dmap1

0.569

e2f4

0.569

Nacc1

0.561

wac

0.477

LOC103191382

0.473

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CYTB	zfx	ENSCMIP00000000014	ENSCMIP00000012137	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain. The b-c1 complex mediates electron transfer from ubiquinol to cytochrome c. Contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis.	Uncharacterized protein.	0.670
LOC103186400	LOC103191382	ENSCMIP00000003198	ENSCMIP00000006404	Uncharacterized protein.	Uncharacterized protein.	0.477
LOC103186400	dctn2	ENSCMIP00000003198	ENSCMIP00000046359	Uncharacterized protein.	Uncharacterized protein.	0.677
LOC103186400	pola1	ENSCMIP00000003198	ENSCMIP00000013115	Uncharacterized protein.	Uncharacterized protein.	0.972
LOC103186400	zfx	ENSCMIP00000003198	ENSCMIP00000012137	Uncharacterized protein.	Uncharacterized protein.	0.578
LOC103191382	LOC103186400	ENSCMIP00000006404	ENSCMIP00000003198	Uncharacterized protein.	Uncharacterized protein.	0.477
LOC103191382	dctn2	ENSCMIP00000006404	ENSCMIP00000046359	Uncharacterized protein.	Uncharacterized protein.	0.614
LOC103191382	pola1	ENSCMIP00000006404	ENSCMIP00000013115	Uncharacterized protein.	Uncharacterized protein.	0.477
LOC103191382	zfx	ENSCMIP00000006404	ENSCMIP00000012137	Uncharacterized protein.	Uncharacterized protein.	0.473
Nacc1	cnot3	ENSCMIP00000005981	ENSCMIP00000027414	Uncharacterized protein.	Uncharacterized protein.	0.561
Nacc1	dmap1	ENSCMIP00000005981	ENSCMIP00000022986	Uncharacterized protein.	Uncharacterized protein.	0.419
Nacc1	e2f4	ENSCMIP00000005981	ENSCMIP00000031884	Uncharacterized protein.	Transcription factor E2F4-like protein.	0.421
Nacc1	zfx	ENSCMIP00000005981	ENSCMIP00000012137	Uncharacterized protein.	Uncharacterized protein.	0.561
cnot3	Nacc1	ENSCMIP00000027414	ENSCMIP00000005981	Uncharacterized protein.	Uncharacterized protein.	0.561
cnot3	dmap1	ENSCMIP00000027414	ENSCMIP00000022986	Uncharacterized protein.	Uncharacterized protein.	0.567
cnot3	e2f4	ENSCMIP00000027414	ENSCMIP00000031884	Uncharacterized protein.	Transcription factor E2F4-like protein.	0.577
cnot3	zfx	ENSCMIP00000027414	ENSCMIP00000012137	Uncharacterized protein.	Uncharacterized protein.	0.573
dctn2	LOC103186400	ENSCMIP00000046359	ENSCMIP00000003198	Uncharacterized protein.	Uncharacterized protein.	0.677
dctn2	LOC103191382	ENSCMIP00000046359	ENSCMIP00000006404	Uncharacterized protein.	Uncharacterized protein.	0.614
dctn2	pola1	ENSCMIP00000046359	ENSCMIP00000013115	Uncharacterized protein.	Uncharacterized protein.	0.677