STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc113DUF4201 domain-containing protein. (396 aa)    
Predicted Functional Partners:
ccdc146
Uncharacterized protein.
   
  
 0.608
ccdc92
CCDC92 domain-containing protein.
      
 0.592
ccdc125
Uncharacterized protein.
      
 0.553
lztfl1
Leucine zipper transcription factor-like protein 1.
      
 0.553
ENSCMIP00000024827
DUF4550 domain-containing protein.
   
  
 0.538
cfap206
Uncharacterized protein.
  
  
 0.527
ENSCMIP00000032677
Uncharacterized protein.
   
  
 0.480
ccdc149
Uncharacterized protein.
      
 0.470
lrriq1
Uncharacterized protein.
   
  
 0.468
cfap52
WD repeat domain 16.
   
  
 0.466
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.