scaf8 protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

scaf8

Uncharacterized protein. (1139 aa)

Predicted Functional Partners:

setx

0.923

trank1

0.789

Rnmt

0.702

LOC103174263

0.675

ENSCMIP00000004147

0.675

ENSCMIP00000018780

0.675

ncbp2

0.664

exosc10

0.626

ncbp1

0.620

pcf11

0.611

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000004147	LOC103174263	ENSCMIP00000004147	ENSCMIP00000001946	RNA_pol_Rpb1_1 domain-containing protein.	Uncharacterized protein.	0.919
ENSCMIP00000004147	Rnmt	ENSCMIP00000004147	ENSCMIP00000046948	RNA_pol_Rpb1_1 domain-containing protein.	mRNA cap 0 methyltransferase domain-containing protein.	0.696
ENSCMIP00000004147	ncbp1	ENSCMIP00000004147	ENSCMIP00000016241	RNA_pol_Rpb1_1 domain-containing protein.	MIF4G domain-containing protein.	0.602
ENSCMIP00000004147	ncbp2	ENSCMIP00000004147	ENSCMIP00000019578	RNA_pol_Rpb1_1 domain-containing protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.630
ENSCMIP00000004147	pcf11	ENSCMIP00000004147	ENSCMIP00000036164	RNA_pol_Rpb1_1 domain-containing protein.	CID domain-containing protein.	0.828
ENSCMIP00000004147	scaf8	ENSCMIP00000004147	ENSCMIP00000012173	RNA_pol_Rpb1_1 domain-containing protein.	Uncharacterized protein.	0.675
ENSCMIP00000004147	setx	ENSCMIP00000004147	ENSCMIP00000032377	RNA_pol_Rpb1_1 domain-containing protein.	Uncharacterized protein.	0.721
ENSCMIP00000018780	Rnmt	ENSCMIP00000018780	ENSCMIP00000046948	Uncharacterized protein.	mRNA cap 0 methyltransferase domain-containing protein.	0.715
ENSCMIP00000018780	ncbp1	ENSCMIP00000018780	ENSCMIP00000016241	Uncharacterized protein.	MIF4G domain-containing protein.	0.602
ENSCMIP00000018780	ncbp2	ENSCMIP00000018780	ENSCMIP00000019578	Uncharacterized protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.653
ENSCMIP00000018780	pcf11	ENSCMIP00000018780	ENSCMIP00000036164	Uncharacterized protein.	CID domain-containing protein.	0.845
ENSCMIP00000018780	scaf8	ENSCMIP00000018780	ENSCMIP00000012173	Uncharacterized protein.	Uncharacterized protein.	0.675
ENSCMIP00000018780	setx	ENSCMIP00000018780	ENSCMIP00000032377	Uncharacterized protein.	Uncharacterized protein.	0.721
LOC103174263	ENSCMIP00000004147	ENSCMIP00000001946	ENSCMIP00000004147	Uncharacterized protein.	RNA_pol_Rpb1_1 domain-containing protein.	0.919
LOC103174263	Rnmt	ENSCMIP00000001946	ENSCMIP00000046948	Uncharacterized protein.	mRNA cap 0 methyltransferase domain-containing protein.	0.743
LOC103174263	ncbp1	ENSCMIP00000001946	ENSCMIP00000016241	Uncharacterized protein.	MIF4G domain-containing protein.	0.651
LOC103174263	ncbp2	ENSCMIP00000001946	ENSCMIP00000019578	Uncharacterized protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.687
LOC103174263	pcf11	ENSCMIP00000001946	ENSCMIP00000036164	Uncharacterized protein.	CID domain-containing protein.	0.873
LOC103174263	scaf8	ENSCMIP00000001946	ENSCMIP00000012173	Uncharacterized protein.	Uncharacterized protein.	0.675
LOC103174263	setx	ENSCMIP00000001946	ENSCMIP00000032377	Uncharacterized protein.	Uncharacterized protein.	0.721