scaf8 protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene co-occurrence

gene fusions

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[Homology]

Score

scaf8

Uncharacterized protein. (1139 aa)

Predicted Functional Partners:

setx

0.868

exosc10

0.824

ncbp2

0.773

drosha

0.772

ncbp1

0.754

trank1

0.748

pcf11

0.729

polr2b

0.715

polr2c

0.712

mtrex

0.695

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
drosha	exosc10	ENSCMIP00000035084	ENSCMIP00000004331	Uncharacterized protein.	HRDC domain-containing protein.	0.594
drosha	polr2c	ENSCMIP00000035084	ENSCMIP00000008812	Uncharacterized protein.	RPOLD domain-containing protein.	0.508
drosha	scaf8	ENSCMIP00000035084	ENSCMIP00000012173	Uncharacterized protein.	Uncharacterized protein.	0.772
drosha	setx	ENSCMIP00000035084	ENSCMIP00000032377	Uncharacterized protein.	Uncharacterized protein.	0.834
drosha	trank1	ENSCMIP00000035084	ENSCMIP00000025079	Uncharacterized protein.	Uncharacterized protein.	0.721
exosc10	drosha	ENSCMIP00000004331	ENSCMIP00000035084	HRDC domain-containing protein.	Uncharacterized protein.	0.594
exosc10	mtrex	ENSCMIP00000004331	ENSCMIP00000048124	HRDC domain-containing protein.	Uncharacterized protein.	0.997
exosc10	ncbp1	ENSCMIP00000004331	ENSCMIP00000016241	HRDC domain-containing protein.	MIF4G domain-containing protein.	0.821
exosc10	ncbp2	ENSCMIP00000004331	ENSCMIP00000019578	HRDC domain-containing protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.729
exosc10	pcf11	ENSCMIP00000004331	ENSCMIP00000036164	HRDC domain-containing protein.	CID domain-containing protein.	0.404
exosc10	polr2c	ENSCMIP00000004331	ENSCMIP00000008812	HRDC domain-containing protein.	RPOLD domain-containing protein.	0.544
exosc10	scaf8	ENSCMIP00000004331	ENSCMIP00000012173	HRDC domain-containing protein.	Uncharacterized protein.	0.824
exosc10	setx	ENSCMIP00000004331	ENSCMIP00000032377	HRDC domain-containing protein.	Uncharacterized protein.	0.810
exosc10	trank1	ENSCMIP00000004331	ENSCMIP00000025079	HRDC domain-containing protein.	Uncharacterized protein.	0.687
mtrex	exosc10	ENSCMIP00000048124	ENSCMIP00000004331	Uncharacterized protein.	HRDC domain-containing protein.	0.997
mtrex	ncbp1	ENSCMIP00000048124	ENSCMIP00000016241	Uncharacterized protein.	MIF4G domain-containing protein.	0.967
mtrex	ncbp2	ENSCMIP00000048124	ENSCMIP00000019578	Uncharacterized protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.983
mtrex	scaf8	ENSCMIP00000048124	ENSCMIP00000012173	Uncharacterized protein.	Uncharacterized protein.	0.695
mtrex	setx	ENSCMIP00000048124	ENSCMIP00000032377	Uncharacterized protein.	Uncharacterized protein.	0.602
mtrex	trank1	ENSCMIP00000048124	ENSCMIP00000025079	Uncharacterized protein.	Uncharacterized protein.	0.495