tube1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tube1

Uncharacterized protein; Belongs to the tubulin family. (474 aa)

Predicted Functional Partners:

tubd1

0.938

fgl1

0.768

ENSCMIP00000005060

0.673

LOC103187939

0.673

cct2

0.614

irak1bp1

0.585

ENSCMIP00000001071

0.578

ENSCMIP00000001667

0.578

ENSCMIP00000004445

0.578

LOC103172121

0.578

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000001071	ENSCMIP00000001667	ENSCMIP00000001071	ENSCMIP00000001667	Tubulin domain-containing protein.	Uncharacterized protein; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.408
ENSCMIP00000001071	ENSCMIP00000005060	ENSCMIP00000001071	ENSCMIP00000005060	Tubulin domain-containing protein.	NDK domain-containing protein; Belongs to the NDK family.	0.684
ENSCMIP00000001071	LOC103187939	ENSCMIP00000001071	ENSCMIP00000030608	Tubulin domain-containing protein.	Uncharacterized protein; Belongs to the NDK family.	0.684
ENSCMIP00000001071	tube1	ENSCMIP00000001071	ENSCMIP00000012190	Tubulin domain-containing protein.	Uncharacterized protein; Belongs to the tubulin family.	0.578
ENSCMIP00000001667	ENSCMIP00000001071	ENSCMIP00000001667	ENSCMIP00000001071	Uncharacterized protein; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin domain-containing protein.	0.408
ENSCMIP00000001667	ENSCMIP00000004445	ENSCMIP00000001667	ENSCMIP00000004445	Uncharacterized protein; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin domain-containing protein.	0.512
ENSCMIP00000001667	ENSCMIP00000005060	ENSCMIP00000001667	ENSCMIP00000005060	Uncharacterized protein; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	NDK domain-containing protein; Belongs to the NDK family.	0.684
ENSCMIP00000001667	LOC103187939	ENSCMIP00000001667	ENSCMIP00000030608	Uncharacterized protein; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein; Belongs to the NDK family.	0.684
ENSCMIP00000001667	tube1	ENSCMIP00000001667	ENSCMIP00000012190	Uncharacterized protein; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein; Belongs to the tubulin family.	0.578
ENSCMIP00000004445	ENSCMIP00000001667	ENSCMIP00000004445	ENSCMIP00000001667	Tubulin domain-containing protein.	Uncharacterized protein; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.512
ENSCMIP00000004445	ENSCMIP00000005060	ENSCMIP00000004445	ENSCMIP00000005060	Tubulin domain-containing protein.	NDK domain-containing protein; Belongs to the NDK family.	0.684
ENSCMIP00000004445	LOC103187939	ENSCMIP00000004445	ENSCMIP00000030608	Tubulin domain-containing protein.	Uncharacterized protein; Belongs to the NDK family.	0.684
ENSCMIP00000004445	tube1	ENSCMIP00000004445	ENSCMIP00000012190	Tubulin domain-containing protein.	Uncharacterized protein; Belongs to the tubulin family.	0.578
ENSCMIP00000005060	ENSCMIP00000001071	ENSCMIP00000005060	ENSCMIP00000001071	NDK domain-containing protein; Belongs to the NDK family.	Tubulin domain-containing protein.	0.684
ENSCMIP00000005060	ENSCMIP00000001667	ENSCMIP00000005060	ENSCMIP00000001667	NDK domain-containing protein; Belongs to the NDK family.	Uncharacterized protein; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.684
ENSCMIP00000005060	ENSCMIP00000004445	ENSCMIP00000005060	ENSCMIP00000004445	NDK domain-containing protein; Belongs to the NDK family.	Tubulin domain-containing protein.	0.684
ENSCMIP00000005060	LOC103172121	ENSCMIP00000005060	ENSCMIP00000005311	NDK domain-containing protein; Belongs to the NDK family.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.684
ENSCMIP00000005060	LOC103187939	ENSCMIP00000005060	ENSCMIP00000030608	NDK domain-containing protein; Belongs to the NDK family.	Uncharacterized protein; Belongs to the NDK family.	0.755
ENSCMIP00000005060	cct2	ENSCMIP00000005060	ENSCMIP00000047653	NDK domain-containing protein; Belongs to the NDK family.	Uncharacterized protein.	0.516
ENSCMIP00000005060	tubd1	ENSCMIP00000005060	ENSCMIP00000041829	NDK domain-containing protein; Belongs to the NDK family.	Tubulin delta chain; Belongs to the tubulin family.	0.439