LOC103189800 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103189800

Gelsolin-like domain-containing protein. (115 aa)

Predicted Functional Partners:

LOC103173679

0.937

ENSCMIP00000009896

0.914

cog8

0.519

cask

0.501

cog6

0.500

mpp1

0.496

cog3

0.489

LOC103190306

0.434

whrn

0.418

cog4

0.418

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000009896	LOC103173679	ENSCMIP00000009896	ENSCMIP00000003778	Gelsolin-like domain-containing protein.	Uncharacterized protein.	0.940
ENSCMIP00000009896	LOC103189800	ENSCMIP00000009896	ENSCMIP00000014747	Gelsolin-like domain-containing protein.	Gelsolin-like domain-containing protein.	0.914
ENSCMIP00000009896	cask	ENSCMIP00000009896	ENSCMIP00000025532	Gelsolin-like domain-containing protein.	Peripheral plasma membrane protein CASK; Belongs to the MAGUK family.	0.496
ENSCMIP00000009896	cog3	ENSCMIP00000009896	ENSCMIP00000028278	Gelsolin-like domain-containing protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.489
ENSCMIP00000009896	cog4	ENSCMIP00000009896	ENSCMIP00000031179	Gelsolin-like domain-containing protein.	Cog4 domain-containing protein.	0.418
ENSCMIP00000009896	cog6	ENSCMIP00000009896	ENSCMIP00000044746	Gelsolin-like domain-containing protein.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.500
ENSCMIP00000009896	cog8	ENSCMIP00000009896	ENSCMIP00000034662	Gelsolin-like domain-containing protein.	Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.	0.519
ENSCMIP00000009896	mpp1	ENSCMIP00000009896	ENSCMIP00000007789	Gelsolin-like domain-containing protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.496
LOC103173679	ENSCMIP00000009896	ENSCMIP00000003778	ENSCMIP00000009896	Uncharacterized protein.	Gelsolin-like domain-containing protein.	0.940
LOC103173679	LOC103189800	ENSCMIP00000003778	ENSCMIP00000014747	Uncharacterized protein.	Gelsolin-like domain-containing protein.	0.937
LOC103173679	LOC103190306	ENSCMIP00000003778	ENSCMIP00000014805	Uncharacterized protein.	HP domain-containing protein.	0.931
LOC103173679	cask	ENSCMIP00000003778	ENSCMIP00000025532	Uncharacterized protein.	Peripheral plasma membrane protein CASK; Belongs to the MAGUK family.	0.501
LOC103173679	cog3	ENSCMIP00000003778	ENSCMIP00000028278	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.489
LOC103173679	cog4	ENSCMIP00000003778	ENSCMIP00000031179	Uncharacterized protein.	Cog4 domain-containing protein.	0.418
LOC103173679	cog6	ENSCMIP00000003778	ENSCMIP00000044746	Uncharacterized protein.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.500
LOC103173679	cog8	ENSCMIP00000003778	ENSCMIP00000034662	Uncharacterized protein.	Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.	0.519
LOC103173679	mpp1	ENSCMIP00000003778	ENSCMIP00000007789	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.496
LOC103173679	whrn	ENSCMIP00000003778	ENSCMIP00000015558	Uncharacterized protein.	Uncharacterized protein.	0.418
LOC103189800	ENSCMIP00000009896	ENSCMIP00000014747	ENSCMIP00000009896	Gelsolin-like domain-containing protein.	Gelsolin-like domain-containing protein.	0.914
LOC103189800	LOC103173679	ENSCMIP00000014747	ENSCMIP00000003778	Gelsolin-like domain-containing protein.	Uncharacterized protein.	0.937