rara protein (Callorhinchus milii) - STRING interaction network

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

rara

Uncharacterized protein. (390 aa)

Predicted Functional Partners:

rxra

0.787

LOC103184778

0.787

nr1d2

0.716

ncor1

0.702

ENSCMIP00000033330

0.702

Ncor2

0.702

med1

0.692

LOC103181543

0.692

asxl1

0.665

Crabp2

0.542

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Crabp2	LOC103184778	ENSCMIP00000009097	ENSCMIP00000008330	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	Uncharacterized protein.	0.471
Crabp2	rara	ENSCMIP00000009097	ENSCMIP00000015297	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	Uncharacterized protein.	0.542
Crabp2	rxra	ENSCMIP00000009097	ENSCMIP00000001921	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	Uncharacterized protein.	0.471
ENSCMIP00000033330	LOC103181543	ENSCMIP00000033330	ENSCMIP00000035790	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.518
ENSCMIP00000033330	LOC103184778	ENSCMIP00000033330	ENSCMIP00000008330	Uncharacterized protein.	Uncharacterized protein.	0.788
ENSCMIP00000033330	med1	ENSCMIP00000033330	ENSCMIP00000032972	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.518
ENSCMIP00000033330	nr1d2	ENSCMIP00000033330	ENSCMIP00000037243	Uncharacterized protein.	Uncharacterized protein.	0.822
ENSCMIP00000033330	rara	ENSCMIP00000033330	ENSCMIP00000015297	Uncharacterized protein.	Uncharacterized protein.	0.702
ENSCMIP00000033330	rxra	ENSCMIP00000033330	ENSCMIP00000001921	Uncharacterized protein.	Uncharacterized protein.	0.788
LOC103181543	ENSCMIP00000033330	ENSCMIP00000035790	ENSCMIP00000033330	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Uncharacterized protein.	0.518
LOC103181543	LOC103184778	ENSCMIP00000035790	ENSCMIP00000008330	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Uncharacterized protein.	0.755
LOC103181543	Ncor2	ENSCMIP00000035790	ENSCMIP00000033386	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Uncharacterized protein.	0.518
LOC103181543	ncor1	ENSCMIP00000035790	ENSCMIP00000029102	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Uncharacterized protein.	0.518
LOC103181543	nr1d2	ENSCMIP00000035790	ENSCMIP00000037243	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Uncharacterized protein.	0.755
LOC103181543	rara	ENSCMIP00000035790	ENSCMIP00000015297	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Uncharacterized protein.	0.692
LOC103181543	rxra	ENSCMIP00000035790	ENSCMIP00000001921	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Uncharacterized protein.	0.755
LOC103184778	Crabp2	ENSCMIP00000008330	ENSCMIP00000009097	Uncharacterized protein.	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	0.471
LOC103184778	ENSCMIP00000033330	ENSCMIP00000008330	ENSCMIP00000033330	Uncharacterized protein.	Uncharacterized protein.	0.788
LOC103184778	LOC103181543	ENSCMIP00000008330	ENSCMIP00000035790	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.755
LOC103184778	Ncor2	ENSCMIP00000008330	ENSCMIP00000033386	Uncharacterized protein.	Uncharacterized protein.	0.788