ENSCMIP00000015333 protein (Callorhinchus milii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCMIP00000015333

HMG box domain-containing protein. (304 aa)

Predicted Functional Partners:

ctnnb1

0.999

nlk

0.986

smad4

0.969

tcf7

0.968

crebbp

0.963

leo1

0.958

ruvbl1

0.955

sox17

0.953

ctbp2

0.952

ctbp1

0.952

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000015333	crebbp	ENSCMIP00000015333	ENSCMIP00000016551	HMG box domain-containing protein.	Uncharacterized protein.	0.963
ENSCMIP00000015333	ctbp1	ENSCMIP00000015333	ENSCMIP00000024304	HMG box domain-containing protein.	Uncharacterized protein.	0.952
ENSCMIP00000015333	ctbp2	ENSCMIP00000015333	ENSCMIP00000016266	HMG box domain-containing protein.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.952
ENSCMIP00000015333	ctnnb1	ENSCMIP00000015333	ENSCMIP00000023661	HMG box domain-containing protein.	Uncharacterized protein.	0.999
ENSCMIP00000015333	leo1	ENSCMIP00000015333	ENSCMIP00000047145	HMG box domain-containing protein.	RNA polymerase-associated protein LEO1.	0.958
ENSCMIP00000015333	nlk	ENSCMIP00000015333	ENSCMIP00000024984	HMG box domain-containing protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.986
ENSCMIP00000015333	ruvbl1	ENSCMIP00000015333	ENSCMIP00000047092	HMG box domain-containing protein.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.955
ENSCMIP00000015333	smad4	ENSCMIP00000015333	ENSCMIP00000031842	HMG box domain-containing protein.	Mothers against decapentaplegic homolog.	0.969
ENSCMIP00000015333	sox17	ENSCMIP00000015333	ENSCMIP00000038510	HMG box domain-containing protein.	Uncharacterized protein.	0.953
ENSCMIP00000015333	tcf7	ENSCMIP00000015333	ENSCMIP00000012251	HMG box domain-containing protein.	HMG box domain-containing protein.	0.968
crebbp	ENSCMIP00000015333	ENSCMIP00000016551	ENSCMIP00000015333	Uncharacterized protein.	HMG box domain-containing protein.	0.963
crebbp	ctbp1	ENSCMIP00000016551	ENSCMIP00000024304	Uncharacterized protein.	Uncharacterized protein.	0.439
crebbp	ctbp2	ENSCMIP00000016551	ENSCMIP00000016266	Uncharacterized protein.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.439
crebbp	ctnnb1	ENSCMIP00000016551	ENSCMIP00000023661	Uncharacterized protein.	Uncharacterized protein.	0.976
crebbp	ruvbl1	ENSCMIP00000016551	ENSCMIP00000047092	Uncharacterized protein.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.571
crebbp	smad4	ENSCMIP00000016551	ENSCMIP00000031842	Uncharacterized protein.	Mothers against decapentaplegic homolog.	0.774
crebbp	tcf7	ENSCMIP00000016551	ENSCMIP00000012251	Uncharacterized protein.	HMG box domain-containing protein.	0.967
ctbp1	ENSCMIP00000015333	ENSCMIP00000024304	ENSCMIP00000015333	Uncharacterized protein.	HMG box domain-containing protein.	0.952
ctbp1	crebbp	ENSCMIP00000024304	ENSCMIP00000016551	Uncharacterized protein.	Uncharacterized protein.	0.439
ctbp1	ctbp2	ENSCMIP00000024304	ENSCMIP00000016266	Uncharacterized protein.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.901