STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
larp7Uncharacterized protein. (595 aa)    
Predicted Functional Partners:
mepce
Bin3-type SAM domain-containing protein.
    
 
 0.987
cdk9
Protein kinase domain-containing protein.
   
 0.941
ENSCMIP00000015179
Uncharacterized protein.
    
 
 0.830
ccnt1
Cyclin N-terminal domain-containing protein.
   
 0.709
ccnt2
Uncharacterized protein; Belongs to the cyclin family.
   
 0.709
sart3
Uncharacterized protein.
   
 0.657
ddx18
RNA helicase.
   
 0.636
aff4
Uncharacterized protein.
    
 0.630
lyar
zf-LYAR domain-containing protein.
   
  
 0.610
fau
Ubiquitin-like domain-containing protein.
   
 0.588
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.