atad2 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

atad2

Bromo domain-containing protein. (1376 aa)

Predicted Functional Partners:

psmd6

0.827

psmd12

0.807

psmd3

0.804

psmd11

0.803

psmd2

0.802

Psmd4

0.790

psma2

0.789

Adrm1

0.782

psmd1

0.769

LOC103174436

0.766

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Adrm1	LOC103174436	ENSCMIP00000035864	ENSCMIP00000003447	RPN13_C domain-containing protein.	Uncharacterized protein.	0.979
Adrm1	Psmd4	ENSCMIP00000035864	ENSCMIP00000000925	RPN13_C domain-containing protein.	Uncharacterized protein.	0.999
Adrm1	atad2	ENSCMIP00000035864	ENSCMIP00000016947	RPN13_C domain-containing protein.	Bromo domain-containing protein.	0.782
Adrm1	psma2	ENSCMIP00000035864	ENSCMIP00000002462	RPN13_C domain-containing protein.	Proteasome endopeptidase complex.	0.975
Adrm1	psmd1	ENSCMIP00000035864	ENSCMIP00000021085	RPN13_C domain-containing protein.	26S proteasome non-ATPase regulatory subunit 1; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S1 family.	0.999
Adrm1	psmd11	ENSCMIP00000035864	ENSCMIP00000019693	RPN13_C domain-containing protein.	PCI domain-containing protein.	0.998
Adrm1	psmd12	ENSCMIP00000035864	ENSCMIP00000048986	RPN13_C domain-containing protein.	PCI domain-containing protein.	0.992
Adrm1	psmd2	ENSCMIP00000035864	ENSCMIP00000019558	RPN13_C domain-containing protein.	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	0.999
Adrm1	psmd3	ENSCMIP00000035864	ENSCMIP00000029563	RPN13_C domain-containing protein.	PCI domain-containing protein.	0.997
Adrm1	psmd6	ENSCMIP00000035864	ENSCMIP00000012904	RPN13_C domain-containing protein.	PCI domain-containing protein.	0.997
LOC103174436	Adrm1	ENSCMIP00000003447	ENSCMIP00000035864	Uncharacterized protein.	RPN13_C domain-containing protein.	0.979
LOC103174436	Psmd4	ENSCMIP00000003447	ENSCMIP00000000925	Uncharacterized protein.	Uncharacterized protein.	0.999
LOC103174436	atad2	ENSCMIP00000003447	ENSCMIP00000016947	Uncharacterized protein.	Bromo domain-containing protein.	0.766
LOC103174436	psma2	ENSCMIP00000003447	ENSCMIP00000002462	Uncharacterized protein.	Proteasome endopeptidase complex.	0.999
LOC103174436	psmd1	ENSCMIP00000003447	ENSCMIP00000021085	Uncharacterized protein.	26S proteasome non-ATPase regulatory subunit 1; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S1 family.	0.991
LOC103174436	psmd11	ENSCMIP00000003447	ENSCMIP00000019693	Uncharacterized protein.	PCI domain-containing protein.	0.994
LOC103174436	psmd12	ENSCMIP00000003447	ENSCMIP00000048986	Uncharacterized protein.	PCI domain-containing protein.	0.997
LOC103174436	psmd2	ENSCMIP00000003447	ENSCMIP00000019558	Uncharacterized protein.	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	0.988
LOC103174436	psmd3	ENSCMIP00000003447	ENSCMIP00000029563	Uncharacterized protein.	PCI domain-containing protein.	0.987
LOC103174436	psmd6	ENSCMIP00000003447	ENSCMIP00000012904	Uncharacterized protein.	PCI domain-containing protein.	0.990