STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ybx1CSD_1 domain-containing protein. (305 aa)    
Predicted Functional Partners:
ddx6
Putative ATP-dependent RNA helicase DDX6-like protein; Belongs to the DEAD box helicase family.
  
 0.877
Srsf9
Uncharacterized protein.
  
 0.833
hnrnpk
Uncharacterized protein.
    
 0.820
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.765
snrnp70
U1 small nuclear ribonucleoprotein 70 kDa.
  
  0.721
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.713
polr2f
Uncharacterized protein.
  
 
 0.711
snrnp48
CHHC U11-48K-type domain-containing protein.
    
 0.706
snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 0.704
snrpf
Sm domain-containing protein.
    
  0.703
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.