STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
suds3Sin3 histone deacetylase corepressor complex component SDS3-like protein. (366 aa)    
Predicted Functional Partners:
arid4b
ARID domain-containing protein.
   
 0.992
arid4a
ARID domain-containing protein.
   
 0.988
ing1
Inhibitor of growth protein.
    
 
 0.964
Sap18
Histone deacetylase complex subunit SAP18-like protein.
     
 0.962
sap30
Uncharacterized protein.
   
 0.939
sin3a
HDAC_interact domain-containing protein.
   
 0.933
sin3b
HDAC_interact domain-containing protein.
   
 0.933
rbbp7
Histone-binding protein RBBP7.
    
 0.900
rbbp4
WD_REPEATS_REGION domain-containing protein.
    
 0.900
hdac3
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.872
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.