STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrrc47B3_4 domain-containing protein. (451 aa)    
Predicted Functional Partners:
eprs1
Uncharacterized protein.
  
 
 0.961
yars1
Tyrosine--tRNA ligase.
  
  
 0.955
LOC103172355
AA_TRNA_LIGASE_II domain-containing protein.
  
 0.949
ENSCMIP00000012697
Uncharacterized protein.
  
 0.949
fdxacb1
FDX-ACB domain-containing protein.
  
 0.916
fars2
Phenylalanyl-tRNA synthetase, mitochondrial-like protein.
  
 0.916
rps13
Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.
  
 
 0.866
Rps11
Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.
  
 
 0.853
riok1
Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.
    
 
 0.830
fau
Ubiquitin-like domain-containing protein.
   
   0.829
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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