slc35b1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

slc35b1

Uncharacterized protein. (361 aa)

Predicted Functional Partners:

pwp2

0.829

gart

0.608

tmem208

0.540

fam117b

0.471

dnajb9

0.464

ier3ip1

0.450

slc35d3

0.436

slc35c1

0.432

slc35a5

0.424

ENSCMIP00000037025

0.411

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000037025	slc35b1	ENSCMIP00000037025	ENSCMIP00000019521	Uncharacterized protein.	Uncharacterized protein.	0.411
dnajb9	slc35b1	ENSCMIP00000034938	ENSCMIP00000019521	J domain-containing protein.	Uncharacterized protein.	0.464
fam117b	slc35b1	ENSCMIP00000036056	ENSCMIP00000019521	Uncharacterized protein.	Uncharacterized protein.	0.471
gart	slc35b1	ENSCMIP00000039298	ENSCMIP00000019521	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	Uncharacterized protein.	0.608
ier3ip1	slc35b1	ENSCMIP00000009370	ENSCMIP00000019521	Immediate early response 3-interacting protein 1.	Uncharacterized protein.	0.450
pwp2	slc35b1	ENSCMIP00000043347	ENSCMIP00000019521	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.829
slc35a5	slc35b1	ENSCMIP00000027655	ENSCMIP00000019521	Uncharacterized protein.	Uncharacterized protein.	0.424
slc35a5	slc35c1	ENSCMIP00000027655	ENSCMIP00000042657	Uncharacterized protein.	TPT domain-containing protein.	0.401
slc35a5	slc35d3	ENSCMIP00000027655	ENSCMIP00000038687	Uncharacterized protein.	Uncharacterized protein.	0.437
slc35b1	ENSCMIP00000037025	ENSCMIP00000019521	ENSCMIP00000037025	Uncharacterized protein.	Uncharacterized protein.	0.411
slc35b1	dnajb9	ENSCMIP00000019521	ENSCMIP00000034938	Uncharacterized protein.	J domain-containing protein.	0.464
slc35b1	fam117b	ENSCMIP00000019521	ENSCMIP00000036056	Uncharacterized protein.	Uncharacterized protein.	0.471
slc35b1	gart	ENSCMIP00000019521	ENSCMIP00000039298	Uncharacterized protein.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.608
slc35b1	ier3ip1	ENSCMIP00000019521	ENSCMIP00000009370	Uncharacterized protein.	Immediate early response 3-interacting protein 1.	0.450
slc35b1	pwp2	ENSCMIP00000019521	ENSCMIP00000043347	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.829
slc35b1	slc35a5	ENSCMIP00000019521	ENSCMIP00000027655	Uncharacterized protein.	Uncharacterized protein.	0.424
slc35b1	slc35c1	ENSCMIP00000019521	ENSCMIP00000042657	Uncharacterized protein.	TPT domain-containing protein.	0.432
slc35b1	slc35d3	ENSCMIP00000019521	ENSCMIP00000038687	Uncharacterized protein.	Uncharacterized protein.	0.436
slc35b1	tmem208	ENSCMIP00000019521	ENSCMIP00000032948	Uncharacterized protein.	Transmembrane protein 208-like protein.	0.540
slc35c1	slc35a5	ENSCMIP00000042657	ENSCMIP00000027655	TPT domain-containing protein.	Uncharacterized protein.	0.401