STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103182720RING-type domain-containing protein. (354 aa)    
Predicted Functional Partners:
ubxn7
UBX domain-containing protein 7.
    
  0.935
usp30
Ubiquitin carboxyl-terminal hydrolase.
     
 0.708
tomm70
TPR_REGION domain-containing protein.
     
 0.585
tmem115
Uncharacterized protein.
   
    0.525
rps27a
Ubiquitin-like domain-containing protein.
    
  0.516
Ubc
Ubiquitin-like domain-containing protein.
    
  0.509
commd5
COMM domain-containing protein 5.
   
 
  0.504
LOC103189408
Peptidylprolyl isomerase.
     
 0.486
fkbp8
Peptidylprolyl isomerase.
     
 0.486
LOC103178513
Mitochondrial import receptor subunit TOM20-like protein.
     
 0.473
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.