STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msi1Uncharacterized protein. (126 aa)    
Predicted Functional Partners:
zc3h14
Uncharacterized protein.
    
 
 0.805
ENSCMIP00000007455
RRM domain-containing protein.
    
 0.691
ctu1
Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position.
      
 0.668
gcn1
Translational activator GCN1.
      
 0.667
crybb2
Beta-crystallin B2; Belongs to the beta/gamma-crystallin family.
      
 0.655
cstf3
Suf domain-containing protein.
   
 
 0.570
tnpo2
Importin N-terminal domain-containing protein.
   
 
 0.558
tnpo1
Importin N-terminal domain-containing protein.
   
 
 0.558
rhobtb2
Uncharacterized protein.
    
  0.471
rhobtb1
Rho-related BTB domain-containing protein 1.
    
  0.471
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.