LOC103189875 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103189875

Cytosolic phospholipase A2 gamma-like protein. (553 aa)

Predicted Functional Partners:

pla2g4a

0.943

mapk1

0.929

gnaq

0.925

LOC103190668

0.923

pla2g12b

0.919

LOC103188674

0.918

LOC103189864

0.918

ENSCMIP00000004237

0.915

pla2g12a

0.914

pisd

0.908

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000004237	LOC103188674	ENSCMIP00000004237	ENSCMIP00000009029	PA2c domain-containing protein.	Phospholipase A(2).	0.921
ENSCMIP00000004237	LOC103189864	ENSCMIP00000004237	ENSCMIP00000020808	PA2c domain-containing protein.	Phospholipase A(2).	0.906
ENSCMIP00000004237	LOC103189875	ENSCMIP00000004237	ENSCMIP00000020925	PA2c domain-containing protein.	Cytosolic phospholipase A2 gamma-like protein.	0.915
ENSCMIP00000004237	LOC103190668	ENSCMIP00000004237	ENSCMIP00000040773	PA2c domain-containing protein.	Phospholipase A(2).	0.906
ENSCMIP00000004237	gnaq	ENSCMIP00000004237	ENSCMIP00000022450	PA2c domain-containing protein.	Uncharacterized protein.	0.900
ENSCMIP00000004237	pisd	ENSCMIP00000004237	ENSCMIP00000010404	PA2c domain-containing protein.	Phosphatidylserine decarboxylase proenzyme, mitochondrial; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine.	0.900
ENSCMIP00000004237	pla2g12a	ENSCMIP00000004237	ENSCMIP00000004034	PA2c domain-containing protein.	Uncharacterized protein.	0.937
ENSCMIP00000004237	pla2g12b	ENSCMIP00000004237	ENSCMIP00000005064	PA2c domain-containing protein.	Uncharacterized protein.	0.918
ENSCMIP00000004237	pla2g4a	ENSCMIP00000004237	ENSCMIP00000042093	PA2c domain-containing protein.	Phospholipase A2.	0.948
LOC103188674	ENSCMIP00000004237	ENSCMIP00000009029	ENSCMIP00000004237	Phospholipase A(2).	PA2c domain-containing protein.	0.921
LOC103188674	LOC103189864	ENSCMIP00000009029	ENSCMIP00000020808	Phospholipase A(2).	Phospholipase A(2).	0.902
LOC103188674	LOC103189875	ENSCMIP00000009029	ENSCMIP00000020925	Phospholipase A(2).	Cytosolic phospholipase A2 gamma-like protein.	0.918
LOC103188674	LOC103190668	ENSCMIP00000009029	ENSCMIP00000040773	Phospholipase A(2).	Phospholipase A(2).	0.955
LOC103188674	gnaq	ENSCMIP00000009029	ENSCMIP00000022450	Phospholipase A(2).	Uncharacterized protein.	0.900
LOC103188674	pisd	ENSCMIP00000009029	ENSCMIP00000010404	Phospholipase A(2).	Phosphatidylserine decarboxylase proenzyme, mitochondrial; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine.	0.900
LOC103188674	pla2g12a	ENSCMIP00000009029	ENSCMIP00000004034	Phospholipase A(2).	Uncharacterized protein.	0.940
LOC103188674	pla2g12b	ENSCMIP00000009029	ENSCMIP00000005064	Phospholipase A(2).	Uncharacterized protein.	0.924
LOC103188674	pla2g4a	ENSCMIP00000009029	ENSCMIP00000042093	Phospholipase A(2).	Phospholipase A2.	0.958
LOC103189864	ENSCMIP00000004237	ENSCMIP00000020808	ENSCMIP00000004237	Phospholipase A(2).	PA2c domain-containing protein.	0.906
LOC103189864	LOC103188674	ENSCMIP00000020808	ENSCMIP00000009029	Phospholipase A(2).	Phospholipase A(2).	0.902