STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ryr1Uncharacterized protein. (4982 aa)    
Predicted Functional Partners:
LOC103177445
Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.
   
 0.939
asph
TPR_REGION domain-containing protein.
   
 
 0.908
ryr3
Uncharacterized protein.
  
  
0.903
ryr2
Uncharacterized protein.
  
  
0.902
Trdn
Asp-B-Hydro_N domain-containing protein.
    
  0.801
LOC103191351
Peptidylprolyl isomerase.
    
 0.702
LOC103180922
Peptidylprolyl isomerase.
    
 0.702
LOC103180925
Peptidylprolyl isomerase.
    
 0.702
fkbp3
Peptidylprolyl isomerase.
    
 0.673
LOC103177931
Uncharacterized protein; Belongs to the peptidase C2 family.
      
 0.653
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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