rab15 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rab15

Uncharacterized protein. (211 aa)

Predicted Functional Partners:

rab3il1

0.705

rab3ip

0.705

exoc4

0.701

exoc2

0.682

exoc5

0.677

rab1a

0.651

cracr2b

0.649

LOC103173852

0.644

gdi2

0.644

LOC103176650

0.644

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103173852	rab15	ENSCMIP00000004808	ENSCMIP00000022738	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.644
LOC103173852	rab1a	ENSCMIP00000004808	ENSCMIP00000049197	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.928
LOC103173852	rab3il1	ENSCMIP00000004808	ENSCMIP00000026661	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Sec2p domain-containing protein.	0.570
LOC103173852	rab3ip	ENSCMIP00000004808	ENSCMIP00000047737	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Rab-3A-interacting protein-like protein.	0.570
LOC103176650	rab15	ENSCMIP00000045456	ENSCMIP00000022738	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.644
LOC103176650	rab1a	ENSCMIP00000045456	ENSCMIP00000049197	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.928
LOC103176650	rab3il1	ENSCMIP00000045456	ENSCMIP00000026661	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Sec2p domain-containing protein.	0.570
LOC103176650	rab3ip	ENSCMIP00000045456	ENSCMIP00000047737	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Rab-3A-interacting protein-like protein.	0.570
cracr2b	rab15	ENSCMIP00000017847	ENSCMIP00000022738	EF-hand calcium-binding domain-containing protein 4A-like protein.	Uncharacterized protein.	0.649
exoc2	exoc4	ENSCMIP00000047854	ENSCMIP00000028723	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	Sec8_exocyst domain-containing protein.	0.999
exoc2	exoc5	ENSCMIP00000047854	ENSCMIP00000001331	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	Exocyst complex component 5.	0.999
exoc2	rab15	ENSCMIP00000047854	ENSCMIP00000022738	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	Uncharacterized protein.	0.682
exoc2	rab1a	ENSCMIP00000047854	ENSCMIP00000049197	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	Uncharacterized protein.	0.401
exoc2	rab3il1	ENSCMIP00000047854	ENSCMIP00000026661	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	Sec2p domain-containing protein.	0.752
exoc2	rab3ip	ENSCMIP00000047854	ENSCMIP00000047737	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	Rab-3A-interacting protein-like protein.	0.752
exoc4	exoc2	ENSCMIP00000028723	ENSCMIP00000047854	Sec8_exocyst domain-containing protein.	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.999
exoc4	exoc5	ENSCMIP00000028723	ENSCMIP00000001331	Sec8_exocyst domain-containing protein.	Exocyst complex component 5.	0.999
exoc4	rab15	ENSCMIP00000028723	ENSCMIP00000022738	Sec8_exocyst domain-containing protein.	Uncharacterized protein.	0.701
exoc4	rab1a	ENSCMIP00000028723	ENSCMIP00000049197	Sec8_exocyst domain-containing protein.	Uncharacterized protein.	0.460
exoc4	rab3il1	ENSCMIP00000028723	ENSCMIP00000026661	Sec8_exocyst domain-containing protein.	Sec2p domain-containing protein.	0.779