ENSCMIP00000022741 protein (Callorhinchus milii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCMIP00000022741

Uncharacterized protein. (77 aa)

Predicted Functional Partners:

sod2

0.530

arid4a

0.502

msl3

0.502

arid4b

0.502

morf4l1

0.502

gsr

0.457

cat

0.440

ero1a

0.431

ero1b

0.431

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000022741	arid4a	ENSCMIP00000022741	ENSCMIP00000002543	Uncharacterized protein.	ARID domain-containing protein.	0.502
ENSCMIP00000022741	arid4b	ENSCMIP00000022741	ENSCMIP00000026045	Uncharacterized protein.	ARID domain-containing protein.	0.502
ENSCMIP00000022741	cat	ENSCMIP00000022741	ENSCMIP00000018464	Uncharacterized protein.	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.	0.440
ENSCMIP00000022741	ero1a	ENSCMIP00000022741	ENSCMIP00000025375	Uncharacterized protein.	Uncharacterized protein.	0.431
ENSCMIP00000022741	ero1b	ENSCMIP00000022741	ENSCMIP00000026732	Uncharacterized protein.	Uncharacterized protein.	0.431
ENSCMIP00000022741	gsr	ENSCMIP00000022741	ENSCMIP00000037007	Uncharacterized protein.	Uncharacterized protein.	0.457
ENSCMIP00000022741	morf4l1	ENSCMIP00000022741	ENSCMIP00000043630	Uncharacterized protein.	MRG domain-containing protein.	0.502
ENSCMIP00000022741	msl3	ENSCMIP00000022741	ENSCMIP00000021671	Uncharacterized protein.	MRG domain-containing protein.	0.502
ENSCMIP00000022741	sod2	ENSCMIP00000022741	ENSCMIP00000029751	Uncharacterized protein.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.530
arid4a	ENSCMIP00000022741	ENSCMIP00000002543	ENSCMIP00000022741	ARID domain-containing protein.	Uncharacterized protein.	0.502
arid4a	arid4b	ENSCMIP00000002543	ENSCMIP00000026045	ARID domain-containing protein.	ARID domain-containing protein.	0.650
arid4b	ENSCMIP00000022741	ENSCMIP00000026045	ENSCMIP00000022741	ARID domain-containing protein.	Uncharacterized protein.	0.502
arid4b	arid4a	ENSCMIP00000026045	ENSCMIP00000002543	ARID domain-containing protein.	ARID domain-containing protein.	0.650
cat	ENSCMIP00000022741	ENSCMIP00000018464	ENSCMIP00000022741	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.	Uncharacterized protein.	0.440
cat	gsr	ENSCMIP00000018464	ENSCMIP00000037007	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.	Uncharacterized protein.	0.740
cat	sod2	ENSCMIP00000018464	ENSCMIP00000029751	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.953
ero1a	ENSCMIP00000022741	ENSCMIP00000025375	ENSCMIP00000022741	Uncharacterized protein.	Uncharacterized protein.	0.431
ero1a	ero1b	ENSCMIP00000025375	ENSCMIP00000026732	Uncharacterized protein.	Uncharacterized protein.	0.901
ero1b	ENSCMIP00000022741	ENSCMIP00000026732	ENSCMIP00000022741	Uncharacterized protein.	Uncharacterized protein.	0.431
ero1b	ero1a	ENSCMIP00000026732	ENSCMIP00000025375	Uncharacterized protein.	Uncharacterized protein.	0.901