STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sub1PC4 domain-containing protein. (134 aa)    
Predicted Functional Partners:
sympk
Uncharacterized protein.
    
 
 0.936
gtf2b
TFIIB-type domain-containing protein.
   
 
 0.700
ENSCMIP00000042064
Uncharacterized protein.
   
    0.683
gtf2f2
General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.
      
 0.550
arl6ip4
Uncharacterized protein.
      
 0.549
supt5h
Transcription elongation factor SPT5.
    
 
 0.547
Pomp
Proteasome maturation protein.
   
  
 0.530
LOC103174904
SMAP domain-containing protein.
   
    0.526
ENSCMIP00000007455
RRM domain-containing protein.
    
 
 0.486
frmpd1
Uncharacterized protein.
      
 0.478
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.