vps35l protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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Cooccurrence

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Experiments

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[Homology]

Score

vps35l

Uncharacterized protein. (991 aa)

Predicted Functional Partners:

ccdc22

0.873

vps29

0.844

commd1

0.839

ccdc93

0.824

ENSCMIP00000010377

0.800

vps26c

0.770

commd2

0.751

K4FUG7_CALMI

0.744

commd4

0.689

dennd10

0.629

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000010377	K4FUG7_CALMI	ENSCMIP00000010377	ENSCMIP00000007114	COMM domain-containing protein.	COMM domain-containing protein 3.	0.926
ENSCMIP00000010377	ccdc22	ENSCMIP00000010377	ENSCMIP00000036310	COMM domain-containing protein.	Uncharacterized protein.	0.906
ENSCMIP00000010377	ccdc93	ENSCMIP00000010377	ENSCMIP00000015721	COMM domain-containing protein.	KOG2701 domain-containing protein.	0.807
ENSCMIP00000010377	commd1	ENSCMIP00000010377	ENSCMIP00000003889	COMM domain-containing protein.	COMM domain-containing protein.	0.941
ENSCMIP00000010377	commd2	ENSCMIP00000010377	ENSCMIP00000023690	COMM domain-containing protein.	COMM domain-containing protein.	0.922
ENSCMIP00000010377	commd4	ENSCMIP00000010377	ENSCMIP00000027565	COMM domain-containing protein.	COMM domain-containing protein 4-like protein.	0.866
ENSCMIP00000010377	dennd10	ENSCMIP00000010377	ENSCMIP00000045300	COMM domain-containing protein.	UDENN domain-containing protein.	0.596
ENSCMIP00000010377	vps26c	ENSCMIP00000010377	ENSCMIP00000005983	COMM domain-containing protein.	Down syndrome critical region protein 3.	0.752
ENSCMIP00000010377	vps29	ENSCMIP00000010377	ENSCMIP00000014288	COMM domain-containing protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.655
ENSCMIP00000010377	vps35l	ENSCMIP00000010377	ENSCMIP00000023774	COMM domain-containing protein.	Uncharacterized protein.	0.800
K4FUG7_CALMI	ENSCMIP00000010377	ENSCMIP00000007114	ENSCMIP00000010377	COMM domain-containing protein 3.	COMM domain-containing protein.	0.926
K4FUG7_CALMI	ccdc22	ENSCMIP00000007114	ENSCMIP00000036310	COMM domain-containing protein 3.	Uncharacterized protein.	0.911
K4FUG7_CALMI	ccdc93	ENSCMIP00000007114	ENSCMIP00000015721	COMM domain-containing protein 3.	KOG2701 domain-containing protein.	0.788
K4FUG7_CALMI	commd1	ENSCMIP00000007114	ENSCMIP00000003889	COMM domain-containing protein 3.	COMM domain-containing protein.	0.892
K4FUG7_CALMI	commd2	ENSCMIP00000007114	ENSCMIP00000023690	COMM domain-containing protein 3.	COMM domain-containing protein.	0.931
K4FUG7_CALMI	commd4	ENSCMIP00000007114	ENSCMIP00000027565	COMM domain-containing protein 3.	COMM domain-containing protein 4-like protein.	0.822
K4FUG7_CALMI	dennd10	ENSCMIP00000007114	ENSCMIP00000045300	COMM domain-containing protein 3.	UDENN domain-containing protein.	0.647
K4FUG7_CALMI	vps26c	ENSCMIP00000007114	ENSCMIP00000005983	COMM domain-containing protein 3.	Down syndrome critical region protein 3.	0.747
K4FUG7_CALMI	vps29	ENSCMIP00000007114	ENSCMIP00000014288	COMM domain-containing protein 3.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.603
K4FUG7_CALMI	vps35l	ENSCMIP00000007114	ENSCMIP00000023774	COMM domain-containing protein 3.	Uncharacterized protein.	0.744