STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab43Uncharacterized protein. (209 aa)    
Predicted Functional Partners:
trappc4
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.804
trappc2
Uncharacterized protein.
    
 0.802
trappc8
Uncharacterized protein.
    
 0.800
rabggtb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.761
uso1
General vesicular transport factor p115.
   
 0.752
ENSCMIP00000001722
Uncharacterized protein.
    
 0.734
trappc6b
Uncharacterized protein.
    
 0.734
stx5
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
    
 0.726
ENSCMIP00000008581
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.703
lca5
Lebercilin domain-containing protein.
    
 0.703
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.