gnpnat1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

gnpnat1

Glucosamine 6-phosphate N-acetyltransferase. (202 aa)

Predicted Functional Partners:

pgm3

0.994

LOC103185861

0.974

LOC103190263

0.974

LOC103183757

0.974

gnpda1

0.972

amdhd2

0.938

LOC103190172

0.926

LOC103190177

0.926

LOC103190178

0.926

LOC103190173

0.926

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103183757	LOC103185861	ENSCMIP00000014966	ENSCMIP00000009169	Uncharacterized protein.	Uncharacterized protein.	0.901
LOC103183757	LOC103190172	ENSCMIP00000014966	ENSCMIP00000002339	Uncharacterized protein.	Uncharacterized protein.	0.704
LOC103183757	LOC103190173	ENSCMIP00000014966	ENSCMIP00000007197	Uncharacterized protein.	Uncharacterized protein.	0.704
LOC103183757	LOC103190177	ENSCMIP00000014966	ENSCMIP00000002582	Uncharacterized protein.	Uncharacterized protein.	0.704
LOC103183757	LOC103190178	ENSCMIP00000014966	ENSCMIP00000004086	Uncharacterized protein.	Uncharacterized protein.	0.704
LOC103183757	LOC103190263	ENSCMIP00000014966	ENSCMIP00000013464	Uncharacterized protein.	Uncharacterized protein.	0.901
LOC103183757	amdhd2	ENSCMIP00000014966	ENSCMIP00000016710	Uncharacterized protein.	N-acetylglucosamine-6-phosphate deacetylase; Belongs to the metallo-dependent hydrolases superfamily. NagA family.	0.981
LOC103183757	gnpda1	ENSCMIP00000014966	ENSCMIP00000026351	Uncharacterized protein.	Glucosamine-6-phosphate isomerase.	0.952
LOC103183757	gnpnat1	ENSCMIP00000014966	ENSCMIP00000025090	Uncharacterized protein.	Glucosamine 6-phosphate N-acetyltransferase.	0.974
LOC103183757	pgm3	ENSCMIP00000014966	ENSCMIP00000028774	Uncharacterized protein.	Phosphoacetylglucosamine mutase; Catalyzes the conversion of GlcNAc-6-P into GlcNAc-1-P during the synthesis of uridine diphosphate/UDP-GlcNAc, a sugar nucleotide critical to multiple glycosylation pathways including protein N- and O- glycosylation; Belongs to the phosphohexose mutase family.	0.667
LOC103185861	LOC103183757	ENSCMIP00000009169	ENSCMIP00000014966	Uncharacterized protein.	Uncharacterized protein.	0.901
LOC103185861	LOC103190172	ENSCMIP00000009169	ENSCMIP00000002339	Uncharacterized protein.	Uncharacterized protein.	0.704
LOC103185861	LOC103190173	ENSCMIP00000009169	ENSCMIP00000007197	Uncharacterized protein.	Uncharacterized protein.	0.704
LOC103185861	LOC103190177	ENSCMIP00000009169	ENSCMIP00000002582	Uncharacterized protein.	Uncharacterized protein.	0.704
LOC103185861	LOC103190178	ENSCMIP00000009169	ENSCMIP00000004086	Uncharacterized protein.	Uncharacterized protein.	0.704
LOC103185861	LOC103190263	ENSCMIP00000009169	ENSCMIP00000013464	Uncharacterized protein.	Uncharacterized protein.	0.901
LOC103185861	amdhd2	ENSCMIP00000009169	ENSCMIP00000016710	Uncharacterized protein.	N-acetylglucosamine-6-phosphate deacetylase; Belongs to the metallo-dependent hydrolases superfamily. NagA family.	0.981
LOC103185861	gnpda1	ENSCMIP00000009169	ENSCMIP00000026351	Uncharacterized protein.	Glucosamine-6-phosphate isomerase.	0.952
LOC103185861	gnpnat1	ENSCMIP00000009169	ENSCMIP00000025090	Uncharacterized protein.	Glucosamine 6-phosphate N-acetyltransferase.	0.974
LOC103185861	pgm3	ENSCMIP00000009169	ENSCMIP00000028774	Uncharacterized protein.	Phosphoacetylglucosamine mutase; Catalyzes the conversion of GlcNAc-6-P into GlcNAc-1-P during the synthesis of uridine diphosphate/UDP-GlcNAc, a sugar nucleotide critical to multiple glycosylation pathways including protein N- and O- glycosylation; Belongs to the phosphohexose mutase family.	0.667