STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lca5Lebercilin domain-containing protein. (751 aa)    
Predicted Functional Partners:
trappc4
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
   
 0.934
trappc2l
Uncharacterized protein.
    
 0.931
trappc2
Uncharacterized protein.
    
 0.931
trappc8
Uncharacterized protein.
    
 0.930
trappc9
Uncharacterized protein.
    
 0.926
trappc10
Uncharacterized protein.
    
 0.924
trappc11
Uncharacterized protein.
    
 0.885
ENSCMIP00000001722
Uncharacterized protein.
   
 0.842
trappc6b
Uncharacterized protein.
   
 0.842
trappc12
TPR_REGION domain-containing protein.
    
 0.838
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.