LOC103188823 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103188823

Uncharacterized protein. (1518 aa)

Predicted Functional Partners:

LOC103188888

0.730

LOC103188879

0.729

LOC103175997

0.722

noxo1

0.528

ENSCMIP00000036159

0.512

ENSCMIP00000042148

0.512

LOC103172358

0.456

suox

0.434

aldh18a1

0.432

calm2

0.420

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000036159	ENSCMIP00000042148	ENSCMIP00000036159	ENSCMIP00000042148	TPR_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.402
ENSCMIP00000036159	LOC103172358	ENSCMIP00000036159	ENSCMIP00000008206	TPR_REGION domain-containing protein.	PB1 domain-containing protein.	0.959
ENSCMIP00000036159	LOC103175997	ENSCMIP00000036159	ENSCMIP00000035070	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.832
ENSCMIP00000036159	LOC103188823	ENSCMIP00000036159	ENSCMIP00000025694	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.512
ENSCMIP00000036159	noxo1	ENSCMIP00000036159	ENSCMIP00000041786	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.828
ENSCMIP00000042148	ENSCMIP00000036159	ENSCMIP00000042148	ENSCMIP00000036159	TPR_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.402
ENSCMIP00000042148	LOC103172358	ENSCMIP00000042148	ENSCMIP00000008206	TPR_REGION domain-containing protein.	PB1 domain-containing protein.	0.959
ENSCMIP00000042148	LOC103175997	ENSCMIP00000042148	ENSCMIP00000035070	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.832
ENSCMIP00000042148	LOC103188823	ENSCMIP00000042148	ENSCMIP00000025694	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.512
ENSCMIP00000042148	noxo1	ENSCMIP00000042148	ENSCMIP00000041786	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.828
LOC103172358	ENSCMIP00000036159	ENSCMIP00000008206	ENSCMIP00000036159	PB1 domain-containing protein.	TPR_REGION domain-containing protein.	0.959
LOC103172358	ENSCMIP00000042148	ENSCMIP00000008206	ENSCMIP00000042148	PB1 domain-containing protein.	TPR_REGION domain-containing protein.	0.959
LOC103172358	LOC103175997	ENSCMIP00000008206	ENSCMIP00000035070	PB1 domain-containing protein.	Uncharacterized protein.	0.848
LOC103172358	LOC103188823	ENSCMIP00000008206	ENSCMIP00000025694	PB1 domain-containing protein.	Uncharacterized protein.	0.456
LOC103172358	noxo1	ENSCMIP00000008206	ENSCMIP00000041786	PB1 domain-containing protein.	Uncharacterized protein.	0.553
LOC103175997	ENSCMIP00000036159	ENSCMIP00000035070	ENSCMIP00000036159	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.832
LOC103175997	ENSCMIP00000042148	ENSCMIP00000035070	ENSCMIP00000042148	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.832
LOC103175997	LOC103172358	ENSCMIP00000035070	ENSCMIP00000008206	Uncharacterized protein.	PB1 domain-containing protein.	0.848
LOC103175997	LOC103188823	ENSCMIP00000035070	ENSCMIP00000025694	Uncharacterized protein.	Uncharacterized protein.	0.722
LOC103175997	noxo1	ENSCMIP00000035070	ENSCMIP00000041786	Uncharacterized protein.	Uncharacterized protein.	0.868