nrdc protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

nrdc

Uncharacterized protein; Belongs to the peptidase M16 family. (1118 aa)

Predicted Functional Partners:

ins

0.862

rps27a

0.809

uba52

0.765

Ubc

0.758

ENSCMIP00000026895

0.668

tomm70

0.662

scp2

0.652

pex13

0.614

pex5l

0.611

setx

0.595

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000026895	ins	ENSCMIP00000026895	ENSCMIP00000017634	CALCITONIN domain-containing protein.	Insulin A chain; Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and glycogen synthesis in liver.	0.641
ENSCMIP00000026895	nrdc	ENSCMIP00000026895	ENSCMIP00000025769	CALCITONIN domain-containing protein.	Uncharacterized protein; Belongs to the peptidase M16 family.	0.668
Ubc	nrdc	ENSCMIP00000028897	ENSCMIP00000025769	Ubiquitin-like domain-containing protein.	Uncharacterized protein; Belongs to the peptidase M16 family.	0.758
Ubc	pex5l	ENSCMIP00000028897	ENSCMIP00000005437	Ubiquitin-like domain-containing protein.	TPR_REGION domain-containing protein.	0.770
Ubc	rps27a	ENSCMIP00000028897	ENSCMIP00000006356	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.994
Ubc	scp2	ENSCMIP00000028897	ENSCMIP00000047563	Ubiquitin-like domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.957
Ubc	uba52	ENSCMIP00000028897	ENSCMIP00000012025	Ubiquitin-like domain-containing protein.	Ribosomal protein L40-like isoform 1.	0.999
ins	ENSCMIP00000026895	ENSCMIP00000017634	ENSCMIP00000026895	Insulin A chain; Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and glycogen synthesis in liver.	CALCITONIN domain-containing protein.	0.641
ins	nrdc	ENSCMIP00000017634	ENSCMIP00000025769	Insulin A chain; Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and glycogen synthesis in liver.	Uncharacterized protein; Belongs to the peptidase M16 family.	0.862
nrdc	ENSCMIP00000026895	ENSCMIP00000025769	ENSCMIP00000026895	Uncharacterized protein; Belongs to the peptidase M16 family.	CALCITONIN domain-containing protein.	0.668
nrdc	Ubc	ENSCMIP00000025769	ENSCMIP00000028897	Uncharacterized protein; Belongs to the peptidase M16 family.	Ubiquitin-like domain-containing protein.	0.758
nrdc	ins	ENSCMIP00000025769	ENSCMIP00000017634	Uncharacterized protein; Belongs to the peptidase M16 family.	Insulin A chain; Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and glycogen synthesis in liver.	0.862
nrdc	pex13	ENSCMIP00000025769	ENSCMIP00000011615	Uncharacterized protein; Belongs to the peptidase M16 family.	SH3 domain-containing protein.	0.614
nrdc	pex5l	ENSCMIP00000025769	ENSCMIP00000005437	Uncharacterized protein; Belongs to the peptidase M16 family.	TPR_REGION domain-containing protein.	0.611
nrdc	rps27a	ENSCMIP00000025769	ENSCMIP00000006356	Uncharacterized protein; Belongs to the peptidase M16 family.	Ubiquitin-like domain-containing protein.	0.809
nrdc	scp2	ENSCMIP00000025769	ENSCMIP00000047563	Uncharacterized protein; Belongs to the peptidase M16 family.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.652
nrdc	setx	ENSCMIP00000025769	ENSCMIP00000032377	Uncharacterized protein; Belongs to the peptidase M16 family.	Uncharacterized protein.	0.595
nrdc	tomm70	ENSCMIP00000025769	ENSCMIP00000047278	Uncharacterized protein; Belongs to the peptidase M16 family.	TPR_REGION domain-containing protein.	0.662
nrdc	uba52	ENSCMIP00000025769	ENSCMIP00000012025	Uncharacterized protein; Belongs to the peptidase M16 family.	Ribosomal protein L40-like isoform 1.	0.765
pex13	nrdc	ENSCMIP00000011615	ENSCMIP00000025769	SH3 domain-containing protein.	Uncharacterized protein; Belongs to the peptidase M16 family.	0.614